miRNA display CGI


Results 181 - 200 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 46736 0.72 0.165578
Target:  5'- -aGGCgCGCgggGCGGGCgGCGGCCGCGg -3'
miRNA:   3'- gcCCGaGCGg--UGCCCGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 118219 0.72 0.165578
Target:  5'- gCGGGg-CGCUgAC-GGCCGCGGCCGCGg -3'
miRNA:   3'- -GCCCgaGCGG-UGcCCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 116417 0.72 0.165578
Target:  5'- gCGcGCcCGCCGCGGGCCcggcccggccgGCGGCUGCGg -3'
miRNA:   3'- -GCcCGaGCGGUGCCCGG-----------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 30316 0.72 0.165578
Target:  5'- gCGcGGCacUCGUgGcCGaGGCCGCGGCCGCGg -3'
miRNA:   3'- -GC-CCG--AGCGgU-GC-CCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 97850 0.72 0.165578
Target:  5'- gCGGGCgcCGCCGCGGcagCGCGGCCgGCAu -3'
miRNA:   3'- -GCCCGa-GCGGUGCCcg-GCGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 29095 0.72 0.165578
Target:  5'- uGGcGCcUGCCugGGGCCGCGcacgacaccGCCGCc -3'
miRNA:   3'- gCC-CGaGCGGugCCCGGCGU---------CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 120001 0.72 0.165578
Target:  5'- aGGGCgccgGCUACGcGGCCGUGuGCCGCGc -3'
miRNA:   3'- gCCCGag--CGGUGC-CCGGCGU-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 99241 0.72 0.165578
Target:  5'- -cGGCgucgCGCCcgcCGGGCCGCguaucaaacAGCCGCAg -3'
miRNA:   3'- gcCCGa---GCGGu--GCCCGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 70647 0.72 0.165578
Target:  5'- gCGGcGCUgagguucggCGCCGC-GGCCGCGGgCCGCAc -3'
miRNA:   3'- -GCC-CGA---------GCGGUGcCCGGCGUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 21702 0.72 0.165578
Target:  5'- gCGGGCgcggaGCgGCGGGCCucgcGCcGCCGCGg -3'
miRNA:   3'- -GCCCGag---CGgUGCCCGG----CGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 11900 0.72 0.165578
Target:  5'- gCGcGCcCGCCGCGGGCCcggcccggccgGCGGCUGCGg -3'
miRNA:   3'- -GCcCGaGCGGUGCCCGG-----------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 30247 0.72 0.169179
Target:  5'- gCGGGCUggagcagacgaucCGCCACugcauGGCCccGCGGCCGCGc -3'
miRNA:   3'- -GCCCGA-------------GCGGUGc----CCGG--CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 120955 0.72 0.169583
Target:  5'- gGaGGCUCGCgcccCGCGGGgCGCGugccGCCGCAg -3'
miRNA:   3'- gC-CCGAGCG----GUGCCCgGCGU----CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 94198 0.72 0.169583
Target:  5'- cCGcGGC-CGCCGCGcggcGGCCGCccGCCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGUGC----CCGGCGu-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 58470 0.72 0.169583
Target:  5'- cCGGGCgcguaugaGCCGCaGGCCggcgcGCGGCCGCu -3'
miRNA:   3'- -GCCCGag------CGGUGcCCGG-----CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 33760 0.72 0.169583
Target:  5'- cCGGGCcCGCuCGCGGGgcCCGCGGCgaGCGc -3'
miRNA:   3'- -GCCCGaGCG-GUGCCC--GGCGUCGg-CGU- -5'
23567 5' -66.4 NC_005261.1 + 74292 0.72 0.169583
Target:  5'- gGGGCggUCGCCGcCGGGCaGCAGaCGCGa -3'
miRNA:   3'- gCCCG--AGCGGU-GCCCGgCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 128391 0.72 0.173262
Target:  5'- gCGGGCUUGCCccggGCGGGCCgGCuagggugGGCuCGCu -3'
miRNA:   3'- -GCCCGAGCGG----UGCCCGG-CG-------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 58084 0.72 0.173262
Target:  5'- gGGGCuguUCGCCGcCGGugguagcggcgccGCCGCuGCCGCGg -3'
miRNA:   3'- gCCCG---AGCGGU-GCC-------------CGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 23874 0.72 0.173262
Target:  5'- gCGGGCUUGCCccggGCGGGCCgGCuagggugGGCuCGCu -3'
miRNA:   3'- -GCCCGAGCGG----UGCCCGG-CG-------UCG-GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.