miRNA display CGI


Results 81 - 100 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 42679 0.75 0.109424
Target:  5'- cCGGGC-CGCCGCcGGCagccgCGCGGCCGCc -3'
miRNA:   3'- -GCCCGaGCGGUGcCCG-----GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3152 0.75 0.112163
Target:  5'- cCGGGCcgcgagccCGCCgccggaaagcgGCGGGCCGCuGCCGCc -3'
miRNA:   3'- -GCCCGa-------GCGG-----------UGCCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 53660 0.75 0.112163
Target:  5'- gCGGcCUgGCCGCGGGUCGCGGCCuCGa -3'
miRNA:   3'- -GCCcGAgCGGUGCCCGGCGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 106783 0.75 0.112163
Target:  5'- cCGGGCUCGuCCucgcCGGGCgGC-GCCGCc -3'
miRNA:   3'- -GCCCGAGC-GGu---GCCCGgCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 31077 0.75 0.112163
Target:  5'- aGGcGCUgGCCGCcuccauGGCCGCGGCCGUg -3'
miRNA:   3'- gCC-CGAgCGGUGc-----CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 64691 0.75 0.112163
Target:  5'- cCGGGCgCGUCcCgGGGCCGCcGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGGuG-CCCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 13101 0.75 0.112163
Target:  5'- gCGGGCUCgGCuCGgGGGCgucgGCGGCCGCGg -3'
miRNA:   3'- -GCCCGAG-CG-GUgCCCGg---CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 122509 0.74 0.114966
Target:  5'- cCGGGCUCucaaCCAUgGGGUCGCcaGGCCGCAu -3'
miRNA:   3'- -GCCCGAGc---GGUG-CCCGGCG--UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 117014 0.74 0.114966
Target:  5'- aCGGGCcCGCCGuCGcGGCCGgGGCCaGCGu -3'
miRNA:   3'- -GCCCGaGCGGU-GC-CCGGCgUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 37518 0.74 0.116967
Target:  5'- gCGGcGCg-GCCGCGGcucgggcggcgcgcGCCGCGGCCGCGg -3'
miRNA:   3'- -GCC-CGagCGGUGCC--------------CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 34800 0.74 0.117834
Target:  5'- gCGaGGCgcgCGCgCGCGuGGCCGCGGcCCGCGc -3'
miRNA:   3'- -GC-CCGa--GCG-GUGC-CCGGCGUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 124249 0.74 0.117834
Target:  5'- gCGGGCaggCGCCgcGCGGcGCCGCccgcgcgccccGGCCGCGa -3'
miRNA:   3'- -GCCCGa--GCGG--UGCC-CGGCG-----------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 102965 0.74 0.117834
Target:  5'- gCGGGC--GCCGCGGGCucCGCcGCCGCGc -3'
miRNA:   3'- -GCCCGagCGGUGCCCG--GCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 131774 0.74 0.117834
Target:  5'- gCGGGCgCGCCGCuGGGCCcCGacGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGGUG-CCCGGcGU--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 79849 0.74 0.120769
Target:  5'- gCGGGUUCGcCCugGaGGCCGaCGucGCCGCAc -3'
miRNA:   3'- -GCCCGAGC-GGugC-CCGGC-GU--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 1923 0.74 0.120769
Target:  5'- gCGcGGCgcacugCGCCGCGGGCagcacCGCGGCgCGCAg -3'
miRNA:   3'- -GC-CCGa-----GCGGUGCCCG-----GCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 28270 0.74 0.120769
Target:  5'- gGGGCgcugUUGCCGCc-GCCGCGGCCGCGg -3'
miRNA:   3'- gCCCG----AGCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 132787 0.74 0.120769
Target:  5'- gGGGCgcugUUGCCGCc-GCCGCGGCCGCGg -3'
miRNA:   3'- gCCCG----AGCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 106440 0.74 0.120769
Target:  5'- gCGcGGCgcacugCGCCGCGGGCagcacCGCGGCgCGCAg -3'
miRNA:   3'- -GC-CCGa-----GCGGUGCCCG-----GCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 71184 0.74 0.123772
Target:  5'- cCGGGCgcaGCuCGCGGGgCGCGGCCaGCu -3'
miRNA:   3'- -GCCCGag-CG-GUGCCCgGCGUCGG-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.