miRNA display CGI


Results 121 - 140 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 58551 0.74 0.133201
Target:  5'- cCGGGCUccugCGCCGuCGuGGCCGCgAGCgGCGa -3'
miRNA:   3'- -GCCCGA----GCGGU-GC-CCGGCG-UCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 84650 0.74 0.133201
Target:  5'- uGGGg-CGCCGCcGGcCCGCGGCCGCu -3'
miRNA:   3'- gCCCgaGCGGUGcCC-GGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 53937 0.73 0.136488
Target:  5'- uCGGcGC-CGCCG-GGGCCGgGGCCGCc -3'
miRNA:   3'- -GCC-CGaGCGGUgCCCGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 105914 0.73 0.136488
Target:  5'- cCGGGC--GCCGC-GGCCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGagCGGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 1397 0.73 0.136488
Target:  5'- cCGGGC--GCCGC-GGCCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGagCGGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 83679 0.73 0.136488
Target:  5'- uGGGCgcgcagcgCGCCgccgagGCGGcGCCGCAGCCaGCGc -3'
miRNA:   3'- gCCCGa-------GCGG------UGCC-CGGCGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 97375 0.73 0.13985
Target:  5'- cCGGGCgugUCGCCGCGcGGCuuuCGCGccuGCCGCGg -3'
miRNA:   3'- -GCCCG---AGCGGUGC-CCG---GCGU---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 97015 0.73 0.13985
Target:  5'- uGGGCggGCCGuCGGGCgCGCccGGCCGCc -3'
miRNA:   3'- gCCCGagCGGU-GCCCG-GCG--UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 29050 0.73 0.13985
Target:  5'- gGGGC-CGCCGCc-GCCGCGGCCGaCAc -3'
miRNA:   3'- gCCCGaGCGGUGccCGGCGUCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 133568 0.73 0.13985
Target:  5'- gGGGC-CGCCGCc-GCCGCGGCCGaCAc -3'
miRNA:   3'- gCCCGaGCGGUGccCGGCGUCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 29338 0.73 0.13985
Target:  5'- --cGCUCGCCgGCGGGCagCGCGGCCGUc -3'
miRNA:   3'- gccCGAGCGG-UGCCCG--GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 64117 0.73 0.143287
Target:  5'- aCGGGCggcacgUGCCGCGcGGCCGCcAGCgCGUc -3'
miRNA:   3'- -GCCCGa-----GCGGUGC-CCGGCG-UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 49144 0.73 0.143287
Target:  5'- --aGCgCGCC-CGGGCCGCAGCCGg- -3'
miRNA:   3'- gccCGaGCGGuGCCCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 32990 0.73 0.143287
Target:  5'- gCGGauGC-CGCCGCagaucacGGCCGCGGCCGCGg -3'
miRNA:   3'- -GCC--CGaGCGGUGc------CCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 107948 0.73 0.143287
Target:  5'- gCGGGCcagCGUCcaggcgggcgcGCGGGCCGCcgcGCCGCGc -3'
miRNA:   3'- -GCCCGa--GCGG-----------UGCCCGGCGu--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 19998 0.73 0.143287
Target:  5'- aCGGcGUagGCCGC-GGCCGCGGCCGUc -3'
miRNA:   3'- -GCC-CGagCGGUGcCCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 90603 0.73 0.143287
Target:  5'- gCGGuGCgCGCgGC-GGCCGCGGCCGCc -3'
miRNA:   3'- -GCC-CGaGCGgUGcCCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 71425 0.73 0.143287
Target:  5'- gGGGCcCgGCC-CGGGcCCGCGGCgCGCAg -3'
miRNA:   3'- gCCCGaG-CGGuGCCC-GGCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 3431 0.73 0.143287
Target:  5'- gCGGGCcagCGUCcaggcgggcgcGCGGGCCGCcgcGCCGCGc -3'
miRNA:   3'- -GCCCGa--GCGG-----------UGCCCGGCGu--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 81471 0.73 0.143287
Target:  5'- aGGGCccaCGCCGCccagagcaGGGCCGCGGCUaGCGc -3'
miRNA:   3'- gCCCGa--GCGGUG--------CCCGGCGUCGG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.