miRNA display CGI


Results 141 - 160 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 15221 0.73 0.146802
Target:  5'- uCGcGGa-CGCCAC-GGCCGCGGCCGUAg -3'
miRNA:   3'- -GC-CCgaGCGGUGcCCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 232 0.73 0.146802
Target:  5'- gCGGGCccCGCgaGCGGGCC-CGGCUGCGg -3'
miRNA:   3'- -GCCCGa-GCGg-UGCCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 106255 0.73 0.146802
Target:  5'- cCGGGC-CGCCGCc-GCCGCuGCCGCc -3'
miRNA:   3'- -GCCCGaGCGGUGccCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137915 0.73 0.146802
Target:  5'- gCGGGCccCGCgaGCGGGCC-CGGCUGCGg -3'
miRNA:   3'- -GCCCGa-GCGg-UGCCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 131919 0.73 0.146802
Target:  5'- aCGGGCUuuuuggCGCgCGCGGGaCCGCGGugcCCGCGc -3'
miRNA:   3'- -GCCCGA------GCG-GUGCCC-GGCGUC---GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 104750 0.73 0.146802
Target:  5'- gCGGGCccCGCgaGCGGGCC-CGGCUGCGg -3'
miRNA:   3'- -GCCCGa-GCGg-UGCCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 18699 0.73 0.146802
Target:  5'- gGGGCcuugcUCgGCCGCGGGgaCCGgGGCCGCGu -3'
miRNA:   3'- gCCCG-----AG-CGGUGCCC--GGCgUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 14993 0.73 0.150395
Target:  5'- gGGGCccgCGCCugGgcGGCCGCuaggcggcaGGCCGCGc -3'
miRNA:   3'- gCCCGa--GCGGugC--CCGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 29479 0.73 0.150395
Target:  5'- gCGcGGCgCGCCGCGGacGCCGCGgcGCCGCc -3'
miRNA:   3'- -GC-CCGaGCGGUGCC--CGGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 30037 0.73 0.150395
Target:  5'- uGGcGCagcucucgCGCC-CGGaGCCGCGGCCGCGc -3'
miRNA:   3'- gCC-CGa-------GCGGuGCC-CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 108734 0.73 0.150395
Target:  5'- gCGGGCcagcggcggCGCCGCGGcGuCCGCGGCgCGCc -3'
miRNA:   3'- -GCCCGa--------GCGGUGCC-C-GGCGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 100077 0.73 0.150395
Target:  5'- gGGGCgCGCCGCGccccucGCCGCcGCCGCu -3'
miRNA:   3'- gCCCGaGCGGUGCc-----CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 59709 0.73 0.150395
Target:  5'- cCGGGCagaccCGCCcgcCGGGCgGCAGCgGCGg -3'
miRNA:   3'- -GCCCGa----GCGGu--GCCCGgCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 73580 0.73 0.154068
Target:  5'- aCGGGCcccccCGCgGCGgaGGCgGCGGCCGCGa -3'
miRNA:   3'- -GCCCGa----GCGgUGC--CCGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 20104 0.73 0.154068
Target:  5'- gGGGCUUccgcggcaagGCgCGCGGGcCCGCAGCgGCu -3'
miRNA:   3'- gCCCGAG----------CG-GUGCCC-GGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 66990 0.73 0.154068
Target:  5'- gGGGCUcggcugCGCCGCcgaGGGCCGCGuGCgCGCGc -3'
miRNA:   3'- gCCCGA------GCGGUG---CCCGGCGU-CG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 136191 0.73 0.157822
Target:  5'- uGcGGCUgGCCGCGGcGCgGCGGCgGCu -3'
miRNA:   3'- gC-CCGAgCGGUGCC-CGgCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 31674 0.73 0.157822
Target:  5'- uGcGGCUgGCCGCGGcGCgGCGGCgGCu -3'
miRNA:   3'- gC-CCGAgCGGUGCC-CGgCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 32148 0.73 0.157822
Target:  5'- gGGGCUCGgCGCGccGCUGCGGCCGg- -3'
miRNA:   3'- gCCCGAGCgGUGCc-CGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 16292 0.73 0.157822
Target:  5'- gGGGggCGCCGuCGGGCC-CAGCgGCGg -3'
miRNA:   3'- gCCCgaGCGGU-GCCCGGcGUCGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.