miRNA display CGI


Results 161 - 180 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 136191 0.73 0.157822
Target:  5'- uGcGGCUgGCCGCGGcGCgGCGGCgGCu -3'
miRNA:   3'- gC-CCGAgCGGUGCC-CGgCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 48111 0.73 0.157822
Target:  5'- uCGccCUCGCCGCGGGCCGCgucggcccAGCCgGCGa -3'
miRNA:   3'- -GCccGAGCGGUGCCCGGCG--------UCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 60758 0.73 0.157822
Target:  5'- gGGGCggGCggggGCGcGGCUGCAGCCGCGc -3'
miRNA:   3'- gCCCGagCGg---UGC-CCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 32000 0.73 0.157822
Target:  5'- aGGGCgcggcggccgCGCCAgGcGGCCGCGGgCGCu -3'
miRNA:   3'- gCCCGa---------GCGGUgC-CCGGCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 136666 0.73 0.157822
Target:  5'- gGGGCUCGgCGCGccGCUGCGGCCGg- -3'
miRNA:   3'- gCCCGAGCgGUGCc-CGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 58937 0.73 0.157822
Target:  5'- gCGGGCUCGCCAacuucuuccaGGGCCuggGC-GCCGUc -3'
miRNA:   3'- -GCCCGAGCGGUg---------CCCGG---CGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 38160 0.73 0.157822
Target:  5'- gGGGCgcggcgCGCCccCGGGCgGCGGCgGCGc -3'
miRNA:   3'- gCCCGa-----GCGGu-GCCCGgCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 59405 0.73 0.159346
Target:  5'- cCGGGCUCGCCggcgccggcgcugucGCGcGGCCcgGCAGgCGCc -3'
miRNA:   3'- -GCCCGAGCGG---------------UGC-CCGG--CGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 40358 0.72 0.160498
Target:  5'- gGGGCUCggaaaucgaugccgGCCGCGcuGCCGCGGCgGCGc -3'
miRNA:   3'- gCCCGAG--------------CGGUGCc-CGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 102670 0.72 0.161658
Target:  5'- cCGcGGCgcccagCGCCGCGuccGCCGCGGCCGUc -3'
miRNA:   3'- -GC-CCGa-----GCGGUGCc--CGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 131157 0.72 0.161658
Target:  5'- gCGGcGCUCGCCGCcuucugcuGCCGCAGCgGCu -3'
miRNA:   3'- -GCC-CGAGCGGUGcc------CGGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 107802 0.72 0.161658
Target:  5'- aGGGcCUCGCgCGCGgcGGCCcuaGCGGCCGCc -3'
miRNA:   3'- gCCC-GAGCG-GUGC--CCGG---CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 47988 0.72 0.161658
Target:  5'- aGGGCgaa-CACGGcGUCGCAGCCGCc -3'
miRNA:   3'- gCCCGagcgGUGCC-CGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 15873 0.72 0.161658
Target:  5'- gGGGC-CG-CGCGaGCCGCGGCCGCc -3'
miRNA:   3'- gCCCGaGCgGUGCcCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 15274 0.72 0.161658
Target:  5'- -cGGCggCGCCGCcgGGGCgCGCGGUCGCGg -3'
miRNA:   3'- gcCCGa-GCGGUG--CCCG-GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136794 0.72 0.161658
Target:  5'- gCGGuGCagGCCagugGCGGGCuCGUAGCCGUAg -3'
miRNA:   3'- -GCC-CGagCGG----UGCCCG-GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 16378 0.72 0.162046
Target:  5'- gCGGGa--GCCGCGGGCUGCuggcgccggugcgccGCCGCGg -3'
miRNA:   3'- -GCCCgagCGGUGCCCGGCGu--------------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 80817 0.72 0.165182
Target:  5'- uGGGCUCGCgGCGccGGCCGCgaucacgGGCgCGCu -3'
miRNA:   3'- gCCCGAGCGgUGC--CCGGCG-------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 103840 0.72 0.165182
Target:  5'- aGGaGCUCGCCcuugcgcGCGaGCCGCGGCgGCGg -3'
miRNA:   3'- gCC-CGAGCGG-------UGCcCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 70647 0.72 0.165578
Target:  5'- gCGGcGCUgagguucggCGCCGC-GGCCGCGGgCCGCAc -3'
miRNA:   3'- -GCC-CGA---------GCGGUGcCCGGCGUC-GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.