miRNA display CGI


Results 101 - 120 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 49638 0.66 0.411798
Target:  5'- uGGcGC-CGCCGggcCGGGCCuCGGCgGCGa -3'
miRNA:   3'- gCC-CGaGCGGU---GCCCGGcGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 78845 0.66 0.411798
Target:  5'- cCGGGCUCGgCGcCGuGG-CGCGGgCGCu -3'
miRNA:   3'- -GCCCGAGCgGU-GC-CCgGCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 12511 0.66 0.411798
Target:  5'- cCGGGCgacCG-CGCGGGgccCCGCGccGCCGCc -3'
miRNA:   3'- -GCCCGa--GCgGUGCCC---GGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3543 0.66 0.411798
Target:  5'- uCGGcGCgcagCGCgGCGGG-CGCGgcGCCGCu -3'
miRNA:   3'- -GCC-CGa---GCGgUGCCCgGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 87098 0.66 0.411798
Target:  5'- gGGGCUuucgCGCCGaaugaucacaGcGGCCGCgacgucaaaGGCCGCGa -3'
miRNA:   3'- gCCCGA----GCGGUg---------C-CCGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 31281 0.66 0.411798
Target:  5'- aGGcGCUgGCCgagaucGCGGcCCGCcGCCGCGc -3'
miRNA:   3'- gCC-CGAgCGG------UGCCcGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 34520 0.66 0.411798
Target:  5'- uGGGCaccuUCGCCgugACGGcCCGCgAGCuCGCGa -3'
miRNA:   3'- gCCCG----AGCGG---UGCCcGGCG-UCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 133617 0.66 0.411798
Target:  5'- uCGcGCUggCGCUGUGGGCCGCGcucGCCGCGc -3'
miRNA:   3'- -GCcCGA--GCGGUGCCCGGCGU---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 17134 0.66 0.411798
Target:  5'- gCGGGUaCGCCgGCGGGUcgaCGUAGaCCGUc -3'
miRNA:   3'- -GCCCGaGCGG-UGCCCG---GCGUC-GGCGu -5'
23567 5' -66.4 NC_005261.1 + 15968 0.66 0.411798
Target:  5'- gCGGGCgggggaggGCC-CGGGCCGCucacccgggcAGCgCGCu -3'
miRNA:   3'- -GCCCGag------CGGuGCCCGGCG----------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 121036 0.66 0.410162
Target:  5'- uGGGCgcgcugcUCGCCGCcgcggcaGGGCUGCccacgcccgcGCCGCGg -3'
miRNA:   3'- gCCCG-------AGCGGUG-------CCCGGCGu---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 70891 0.66 0.409346
Target:  5'- gCGGGCccggCGCUguuccugcggcugaGCGcGGCgGCGGCCGaCGg -3'
miRNA:   3'- -GCCCGa---GCGG--------------UGC-CCGgCGUCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 61795 0.66 0.403659
Target:  5'- uCGGGCgcgucCGCCAUGGcGCCgGCGcucuGCaCGCGc -3'
miRNA:   3'- -GCCCGa----GCGGUGCC-CGG-CGU----CG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 73723 0.66 0.403659
Target:  5'- aGGaGC-CGcCCGCGGGCCccgaGCAcCCGCGc -3'
miRNA:   3'- gCC-CGaGC-GGUGCCCGG----CGUcGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 78767 0.66 0.403659
Target:  5'- cCGGcGCU-GCCcccCGacGCCGCGGCCGCGc -3'
miRNA:   3'- -GCC-CGAgCGGu--GCc-CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 75058 0.66 0.403659
Target:  5'- gCGGGCgUGUCGCGGaGCaCGUcggacacggAGCUGCAg -3'
miRNA:   3'- -GCCCGaGCGGUGCC-CG-GCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 58815 0.66 0.403659
Target:  5'- cCGaGCUCGCCgacACGGGCCugcucgacuacaGCGagauccagcGCCGCAa -3'
miRNA:   3'- -GCcCGAGCGG---UGCCCGG------------CGU---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 36394 0.66 0.403659
Target:  5'- gCGGGCgCGCgGCGGaGau-CAGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGgUGCC-CggcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 91970 0.66 0.403659
Target:  5'- cCGGGgaCacgGUCGC-GGCCGCcGCCGCGg -3'
miRNA:   3'- -GCCCgaG---CGGUGcCCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 4351 0.66 0.403659
Target:  5'- gCGGGCUUGCgCAgaccacagguaGGcGCgGCAGUCGCGc -3'
miRNA:   3'- -GCCCGAGCG-GUg----------CC-CGgCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.