miRNA display CGI


Results 121 - 140 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 73723 0.66 0.403659
Target:  5'- aGGaGC-CGcCCGCGGGCCccgaGCAcCCGCGc -3'
miRNA:   3'- gCC-CGaGC-GGUGCCCGG----CGUcGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 78767 0.66 0.403659
Target:  5'- cCGGcGCU-GCCcccCGacGCCGCGGCCGCGc -3'
miRNA:   3'- -GCC-CGAgCGGu--GCc-CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 4351 0.66 0.403659
Target:  5'- gCGGGCUUGCgCAgaccacagguaGGcGCgGCAGUCGCGc -3'
miRNA:   3'- -GCCCGAGCG-GUg----------CC-CGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 61795 0.66 0.403659
Target:  5'- uCGGGCgcgucCGCCAUGGcGCCgGCGcucuGCaCGCGc -3'
miRNA:   3'- -GCCCGa----GCGGUGCC-CGG-CGU----CG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 36394 0.66 0.403659
Target:  5'- gCGGGCgCGCgGCGGaGau-CAGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGgUGCC-CggcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 58815 0.66 0.403659
Target:  5'- cCGaGCUCGCCgacACGGGCCugcucgacuacaGCGagauccagcGCCGCAa -3'
miRNA:   3'- -GCcCGAGCGG---UGCCCGG------------CGU---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 75847 0.66 0.402851
Target:  5'- gGGGCgcgcggCGCCgacggcggccccgACGGcGCCGUGGgCGCGc -3'
miRNA:   3'- gCCCGa-----GCGG-------------UGCC-CGGCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 7437 0.66 0.398826
Target:  5'- uGGGCgUCGUCcgcggugcggccagcGCGGGgCGCcAGCUGCu -3'
miRNA:   3'- gCCCG-AGCGG---------------UGCCCgGCG-UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 52835 0.66 0.398826
Target:  5'- uCGGGCUCGCgggCGCcuaccagaagcccgaGGGCgGCGG-CGCGa -3'
miRNA:   3'- -GCCCGAGCG---GUG---------------CCCGgCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136444 0.66 0.395624
Target:  5'- gCGGGCgUCG-CAgGGGCaCGCGGCaGCc -3'
miRNA:   3'- -GCCCG-AGCgGUgCCCG-GCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 12132 0.66 0.395624
Target:  5'- uGGcGCcCGCCGCc-GCgGCGGCCGCGc -3'
miRNA:   3'- gCC-CGaGCGGUGccCGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 95644 0.66 0.395624
Target:  5'- uGGGCgagCGCgACGcGCgGC-GCCGCGa -3'
miRNA:   3'- gCCCGa--GCGgUGCcCGgCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 80123 0.66 0.395624
Target:  5'- -aGGCU-GCuCGCGcGGCUGguGCCGCc -3'
miRNA:   3'- gcCCGAgCG-GUGC-CCGGCguCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 7665 0.66 0.395624
Target:  5'- gCGGcGCUucCGCCcgGCGGGCCGCccAGCagauaaaaCGCGa -3'
miRNA:   3'- -GCC-CGA--GCGG--UGCCCGGCG--UCG--------GCGU- -5'
23567 5' -66.4 NC_005261.1 + 133030 0.66 0.395624
Target:  5'- gCGGGCgCGCCACcGcGCaCGCAcguGCUGCGc -3'
miRNA:   3'- -GCCCGaGCGGUGcC-CG-GCGU---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 33884 0.66 0.395624
Target:  5'- gCGGGCggCGCUGCGcgacGGCCG--GCCGCu -3'
miRNA:   3'- -GCCCGa-GCGGUGC----CCGGCguCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 34276 0.66 0.395624
Target:  5'- gGcGGC-CGCCGC-GGUCGC-GCCGCu -3'
miRNA:   3'- gC-CCGaGCGGUGcCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 44826 0.66 0.395624
Target:  5'- --cGCa-GCCGCa-GCCGCAGCCGCAg -3'
miRNA:   3'- gccCGagCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 73901 0.66 0.395624
Target:  5'- gCGGGCccUGaCGCGGGCaCGgcuaCGGCCGCGa -3'
miRNA:   3'- -GCCCGa-GCgGUGCCCG-GC----GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 44802 0.66 0.395624
Target:  5'- --cGCa-GCCGCa-GCCGCAGCCGCAg -3'
miRNA:   3'- gccCGagCGGUGccCGGCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.