miRNA display CGI


Results 141 - 160 of 919 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 130472 0.66 0.395624
Target:  5'- aGcGGCUCGCgGCGuGCCuCGGCgGCGa -3'
miRNA:   3'- gC-CCGAGCGgUGCcCGGcGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 136444 0.66 0.395624
Target:  5'- gCGGGCgUCG-CAgGGGCaCGCGGCaGCc -3'
miRNA:   3'- -GCCCG-AGCgGUgCCCG-GCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 73901 0.66 0.395624
Target:  5'- gCGGGCccUGaCGCGGGCaCGgcuaCGGCCGCGa -3'
miRNA:   3'- -GCCCGa-GCgGUGCCCG-GC----GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 80123 0.66 0.395624
Target:  5'- -aGGCU-GCuCGCGcGGCUGguGCCGCc -3'
miRNA:   3'- gcCCGAgCG-GUGC-CCGGCguCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 71912 0.66 0.394826
Target:  5'- uGGGCUgcacggcCGCCuCGguGGCCGU-GCCGCGc -3'
miRNA:   3'- gCCCGA-------GCGGuGC--CCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 61528 0.66 0.392439
Target:  5'- cCGGGCcuucuccggcaagCGCCGCGGcGCCGCcgacgaucugauGGUgGCGc -3'
miRNA:   3'- -GCCCGa------------GCGGUGCC-CGGCG------------UCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 51330 0.67 0.390852
Target:  5'- gCGGGUccgCGCCGCGcgcggaccagggcgcGGCCaaGGCCGCc -3'
miRNA:   3'- -GCCCGa--GCGGUGC---------------CCGGcgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 100468 0.67 0.387692
Target:  5'- gGGGCgccggCGCUugGGcGgCGCGGCgccCGCGg -3'
miRNA:   3'- gCCCGa----GCGGugCC-CgGCGUCG---GCGU- -5'
23567 5' -66.4 NC_005261.1 + 137587 0.67 0.387692
Target:  5'- cCGGGgaCGCgGCGcuGGCgGCcGCCGCc -3'
miRNA:   3'- -GCCCgaGCGgUGC--CCGgCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 108526 0.67 0.387692
Target:  5'- gGcGGCUCaugGCCACGcaGGCCGCcacguGCgGCAg -3'
miRNA:   3'- gC-CCGAG---CGGUGC--CCGGCGu----CGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 123048 0.67 0.387692
Target:  5'- gCGGcGUUUcCCGCGGgcGCCGCcGCCGCu -3'
miRNA:   3'- -GCC-CGAGcGGUGCC--CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 22043 0.67 0.387692
Target:  5'- uGcGGCgacgCGCCcagcggcguCGGGgaCGCGGCCGCGa -3'
miRNA:   3'- gC-CCGa---GCGGu--------GCCCg-GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136386 0.67 0.387692
Target:  5'- uCGGGCccggCGCCuucGCGcGcGCCGaGGCCGCu -3'
miRNA:   3'- -GCCCGa---GCGG---UGC-C-CGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 56606 0.67 0.387692
Target:  5'- uGGccGCUCGCgGCGGugcugaacccGCCGCGGgCGCc -3'
miRNA:   3'- gCC--CGAGCGgUGCC----------CGGCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 33069 0.67 0.387692
Target:  5'- cCGGGgaCGCgGCGcuGGCgGCcGCCGCc -3'
miRNA:   3'- -GCCCgaGCGgUGC--CCGgCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 134708 0.67 0.387692
Target:  5'- cCGaGGCggcCGCCGCGcuGGa-GCGGCCGCGc -3'
miRNA:   3'- -GC-CCGa--GCGGUGC--CCggCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 131197 0.67 0.387692
Target:  5'- gCGGcGCggUCGCCGCcGGCgCGCccgcguacguGGCCGCGc -3'
miRNA:   3'- -GCC-CG--AGCGGUGcCCG-GCG----------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 35174 0.67 0.387692
Target:  5'- uGGGCgccgUGCCGggacaggcgcUGGGCCcuGCGGcCCGCGc -3'
miRNA:   3'- gCCCGa---GCGGU----------GCCCGG--CGUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 67950 0.67 0.387692
Target:  5'- -cGGCcCGCuCGCGcGGCCGCcGCgGCGa -3'
miRNA:   3'- gcCCGaGCG-GUGC-CCGGCGuCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 60065 0.67 0.387692
Target:  5'- cCGGGCUCcUCAgGuGGCCcgccgGCAGCgGCGg -3'
miRNA:   3'- -GCCCGAGcGGUgC-CCGG-----CGUCGgCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.