miRNA display CGI


Results 161 - 180 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 108526 0.67 0.387692
Target:  5'- gGcGGCUCaugGCCACGcaGGCCGCcacguGCgGCAg -3'
miRNA:   3'- gC-CCGAG---CGGUGC--CCGGCGu----CGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 134708 0.67 0.387692
Target:  5'- cCGaGGCggcCGCCGCGcuGGa-GCGGCCGCGc -3'
miRNA:   3'- -GC-CCGa--GCGGUGC--CCggCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 123048 0.67 0.387692
Target:  5'- gCGGcGUUUcCCGCGGgcGCCGCcGCCGCu -3'
miRNA:   3'- -GCC-CGAGcGGUGCC--CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 100468 0.67 0.387692
Target:  5'- gGGGCgccggCGCUugGGcGgCGCGGCgccCGCGg -3'
miRNA:   3'- gCCCGa----GCGGugCC-CgGCGUCG---GCGU- -5'
23567 5' -66.4 NC_005261.1 + 35174 0.67 0.387692
Target:  5'- uGGGCgccgUGCCGggacaggcgcUGGGCCcuGCGGcCCGCGc -3'
miRNA:   3'- gCCCGa---GCGGU----------GCCCGG--CGUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 22043 0.67 0.387692
Target:  5'- uGcGGCgacgCGCCcagcggcguCGGGgaCGCGGCCGCGa -3'
miRNA:   3'- gC-CCGa---GCGGu--------GCCCg-GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 56606 0.67 0.387692
Target:  5'- uGGccGCUCGCgGCGGugcugaacccGCCGCGGgCGCc -3'
miRNA:   3'- gCC--CGAGCGgUGCC----------CGGCGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 136386 0.67 0.387692
Target:  5'- uCGGGCccggCGCCuucGCGcGcGCCGaGGCCGCu -3'
miRNA:   3'- -GCCCGa---GCGG---UGC-C-CGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 137587 0.67 0.387692
Target:  5'- cCGGGgaCGCgGCGcuGGCgGCcGCCGCc -3'
miRNA:   3'- -GCCCgaGCGgUGC--CCGgCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 60065 0.67 0.387692
Target:  5'- cCGGGCUCcUCAgGuGGCCcgccgGCAGCgGCGg -3'
miRNA:   3'- -GCCCGAGcGGUgC-CCGG-----CGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 58268 0.67 0.386905
Target:  5'- cCGcGCUCGCCGCgcucacgGGGCCGgCGcGCCGgGg -3'
miRNA:   3'- -GCcCGAGCGGUG-------CCCGGC-GU-CGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 71031 0.67 0.384549
Target:  5'- cCGGGCguggaugcgcgugUGCCugGGGgggcaCGUGGCCGUg -3'
miRNA:   3'- -GCCCGa------------GCGGugCCCg----GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 135393 0.67 0.382984
Target:  5'- gGGGC-CGCCggcccugccgcccgaGCucGGGCUGgGGCCGCc -3'
miRNA:   3'- gCCCGaGCGG---------------UG--CCCGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 30876 0.67 0.382984
Target:  5'- gGGGC-CGCCggcccugccgcccgaGCucGGGCUGgGGCCGCc -3'
miRNA:   3'- gCCCGaGCGG---------------UG--CCCGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 136704 0.67 0.382984
Target:  5'- gCGGGCggCGCgCGCuGGaGCUGCgcccgacgagcugccGGCCGCGg -3'
miRNA:   3'- -GCCCGa-GCG-GUG-CC-CGGCG---------------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 35116 0.67 0.379866
Target:  5'- cCGGGCgcgcuggCGCCGgGGGC-GCuGGCCGg- -3'
miRNA:   3'- -GCCCGa------GCGGUgCCCGgCG-UCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 44325 0.67 0.379866
Target:  5'- gCGGGC--GCCGCGc-CCGCAGUCGCu -3'
miRNA:   3'- -GCCCGagCGGUGCccGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 103621 0.67 0.379866
Target:  5'- gGGGCUCcagcgcgucgGCCA--GGCCGUcgucgucgaAGCCGCAc -3'
miRNA:   3'- gCCCGAG----------CGGUgcCCGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 95945 0.67 0.379866
Target:  5'- uGGGCgacaucUCGCgGCGgcugcuGGgCGCGGCCGCc -3'
miRNA:   3'- gCCCG------AGCGgUGC------CCgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 132230 0.67 0.379866
Target:  5'- cCGGaGCccUCGCCGCGGGaggaGCGGagaCGCGc -3'
miRNA:   3'- -GCC-CG--AGCGGUGCCCgg--CGUCg--GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.