miRNA display CGI


Results 101 - 120 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 14962 0.8 0.042952
Target:  5'- gCGGGCgUGCCugGGGCgacugCGCGGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGGugCCCG-----GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 14993 0.73 0.150395
Target:  5'- gGGGCccgCGCCugGgcGGCCGCuaggcggcaGGCCGCGc -3'
miRNA:   3'- gCCCGa--GCGGugC--CCGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 15221 0.73 0.146802
Target:  5'- uCGcGGa-CGCCAC-GGCCGCGGCCGUAg -3'
miRNA:   3'- -GC-CCgaGCGGUGcCCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 15274 0.72 0.161658
Target:  5'- -cGGCggCGCCGCcgGGGCgCGCGGUCGCGg -3'
miRNA:   3'- gcCCGa-GCGGUG--CCCG-GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 15280 0.67 0.357029
Target:  5'- gGGGCccCGCuguUugGGGUugagcgCGCGGCCGCGc -3'
miRNA:   3'- gCCCGa-GCG---GugCCCG------GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 15789 0.69 0.281757
Target:  5'- gCGGGCgcCGcCCGCGcGGCCaGC-GCCGCc -3'
miRNA:   3'- -GCCCGa-GC-GGUGC-CCGG-CGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 15873 0.72 0.161658
Target:  5'- gGGGC-CG-CGCGaGCCGCGGCCGCc -3'
miRNA:   3'- gCCCGaGCgGUGCcCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 15931 0.69 0.275576
Target:  5'- cCGGGCgUCGCCuGCGGcagCGgGGCCGCGc -3'
miRNA:   3'- -GCCCG-AGCGG-UGCCcg-GCgUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 15968 0.66 0.411798
Target:  5'- gCGGGCgggggaggGCC-CGGGCCGCucacccgggcAGCgCGCu -3'
miRNA:   3'- -GCCCGag------CGGuGCCCGGCG----------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 16051 0.72 0.173675
Target:  5'- aGGGCgugacgggCGCCAuCGuGGCCGCGGUCGa- -3'
miRNA:   3'- gCCCGa-------GCGGU-GC-CCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 16239 0.68 0.312957
Target:  5'- gGGGCggucgacguccgCGCCG-GGGCCGCcggGGCCGg- -3'
miRNA:   3'- gCCCGa-----------GCGGUgCCCGGCG---UCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 16292 0.73 0.157822
Target:  5'- gGGGggCGCCGuCGGGCC-CAGCgGCGg -3'
miRNA:   3'- gCCCgaGCGGU-GCCCGGcGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 16378 0.72 0.162046
Target:  5'- gCGGGa--GCCGCGGGCUGCuggcgccggugcgccGCCGCGg -3'
miRNA:   3'- -GCCCgagCGGUGCCCGGCGu--------------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 16417 0.67 0.349634
Target:  5'- gCGGGagaggccccCUCGaCgGCGGGCgGCGGCuCGUAg -3'
miRNA:   3'- -GCCC---------GAGC-GgUGCCCGgCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 16593 0.67 0.364534
Target:  5'- cCGcGCUCGCCgGCGgcGGCCGCcgAGCgGCGg -3'
miRNA:   3'- -GCcCGAGCGG-UGC--CCGGCG--UCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 16844 0.68 0.32811
Target:  5'- uCGGGCaggcgccgcCGCCGCGGGgcgcCUGCAGUaCGCGa -3'
miRNA:   3'- -GCCCGa--------GCGGUGCCC----GGCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 16945 0.67 0.364534
Target:  5'- aCGGGgaCGagaGCGaGGCCggGCGGCCGCc -3'
miRNA:   3'- -GCCCgaGCgg-UGC-CCGG--CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 17134 0.66 0.411798
Target:  5'- gCGGGUaCGCCgGCGGGUcgaCGUAGaCCGUc -3'
miRNA:   3'- -GCCCGaGCGG-UGCCCG---GCGUC-GGCGu -5'
23567 5' -66.4 NC_005261.1 + 17608 0.72 0.175336
Target:  5'- aGGGC-CGCCaccagcaggagccccACGGcGCCGaGGCCGCAg -3'
miRNA:   3'- gCCCGaGCGG---------------UGCC-CGGCgUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 17968 0.67 0.379866
Target:  5'- gCGGGCgguagaCGgC-CGGcGUgGCAGCCGCGg -3'
miRNA:   3'- -GCCCGa-----GCgGuGCC-CGgCGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.