miRNA display CGI


Results 141 - 160 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 20940 0.68 0.300959
Target:  5'- uGGGCUCGaggGCGGGCuCGCGccaggcucGCCGUc -3'
miRNA:   3'- gCCCGAGCgg-UGCCCG-GCGU--------CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 21551 0.7 0.22476
Target:  5'- aGGcGCUCGCgAuUGGGCCGgC-GCCGCGg -3'
miRNA:   3'- gCC-CGAGCGgU-GCCCGGC-GuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 21600 0.7 0.219632
Target:  5'- gCGGGcCUCGCCcucgucggcggGCGGGCgGUgcgagGGCUGCGg -3'
miRNA:   3'- -GCCC-GAGCGG-----------UGCCCGgCG-----UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 21624 0.7 0.219632
Target:  5'- uCGGGCgagggucccCGCCccggcGCGGacGCCGCuGCCGCAc -3'
miRNA:   3'- -GCCCGa--------GCGG-----UGCC--CGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 21702 0.72 0.165578
Target:  5'- gCGGGCgcggaGCgGCGGGCCucgcGCcGCCGCGg -3'
miRNA:   3'- -GCCCGag---CGgUGCCCGG----CGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 21772 0.82 0.02995
Target:  5'- cCGGGCgagcCGCCGCGGcgcgggccGCCGCAGCCGCc -3'
miRNA:   3'- -GCCCGa---GCGGUGCC--------CGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 21817 0.69 0.275576
Target:  5'- cCGGGCcCGCgGCGGGCgCGCgugcgggcgGGCuCGCc -3'
miRNA:   3'- -GCCCGaGCGgUGCCCG-GCG---------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 22043 0.67 0.387692
Target:  5'- uGcGGCgacgCGCCcagcggcguCGGGgaCGCGGCCGCGa -3'
miRNA:   3'- gC-CCGa---GCGGu--------GCCCg-GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 22371 0.69 0.288048
Target:  5'- cCGGGCgCGCCuc-GGCgGgGGCCGCGc -3'
miRNA:   3'- -GCCCGaGCGGugcCCGgCgUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 22738 0.7 0.240753
Target:  5'- gGGGCUgCGgCGCGccGCCGCGGCCGa- -3'
miRNA:   3'- gCCCGA-GCgGUGCc-CGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 22795 0.68 0.305582
Target:  5'- gGGGgUUGUCGCGGccggcggcggcgcuGCCGCcGCCGCc -3'
miRNA:   3'- gCCCgAGCGGUGCC--------------CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 23184 0.77 0.077129
Target:  5'- gGGGCgacagcgagcgCGCCGCGGGgcCCGCAGCgGCGg -3'
miRNA:   3'- gCCCGa----------GCGGUGCCC--GGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 23222 0.71 0.200114
Target:  5'- aCGaGGC-CuCCGCgGGGCCGgGGCCGCGg -3'
miRNA:   3'- -GC-CCGaGcGGUG-CCCGGCgUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 23455 0.67 0.357029
Target:  5'- aGGGCagaaggCGCCA-GGcCCGCGGCgGCGa -3'
miRNA:   3'- gCCCGa-----GCGGUgCCcGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 23490 0.68 0.314313
Target:  5'- gCGGGCcCGCCugggcaggcGCGGGCCcugGgAGCaCGCGg -3'
miRNA:   3'- -GCCCGaGCGG---------UGCCCGG---CgUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 23760 0.71 0.190483
Target:  5'- gCGGGCUUGCCccggGCGGGCCgGCuagggugGGCuCGCc -3'
miRNA:   3'- -GCCCGAGCGG----UGCCCGG-CG-------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 23817 0.71 0.190483
Target:  5'- gCGGGCUUGCCccggGCGGGCCgGCuagggugGGCuCGCc -3'
miRNA:   3'- -GCCCGAGCGG----UGCCCGG-CG-------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 23874 0.72 0.173262
Target:  5'- gCGGGCUUGCCccggGCGGGCCgGCuagggugGGCuCGCu -3'
miRNA:   3'- -GCCCGAGCGG----UGCCCGG-CG-------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 24904 0.68 0.321155
Target:  5'- gCGGGCgccccuucaaGCCcuCGgcGGCUGCAGCCGCc -3'
miRNA:   3'- -GCCCGag--------CGGu-GC--CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 25749 0.68 0.314313
Target:  5'- ---aCUCGUCGCGGGCgaGCAuGCCGCGc -3'
miRNA:   3'- gcccGAGCGGUGCCCGg-CGU-CGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.