miRNA display CGI


Results 161 - 180 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 26605 0.76 0.085288
Target:  5'- gCGGGCggcggCGgCACGGcGCCGCAGCC-CAg -3'
miRNA:   3'- -GCCCGa----GCgGUGCC-CGGCGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 26966 0.68 0.298994
Target:  5'- gGGuGCUCGCUcucagcggcaggugGCcuGGGCC-CGGCCGCGg -3'
miRNA:   3'- gCC-CGAGCGG--------------UG--CCCGGcGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 27713 0.67 0.379866
Target:  5'- cCGGaGCccUCGCCGCGGGaggaGCGGagaCGCGc -3'
miRNA:   3'- -GCC-CG--AGCGGUGCCCgg--CGUCg--GCGU- -5'
23567 5' -66.4 NC_005261.1 + 28202 0.68 0.314313
Target:  5'- gCGGcCUCGCCGCcgcuGCCGCGGCCcCAg -3'
miRNA:   3'- -GCCcGAGCGGUGcc--CGGCGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 28270 0.74 0.120769
Target:  5'- gGGGCgcugUUGCCGCc-GCCGCGGCCGCGg -3'
miRNA:   3'- gCCCG----AGCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 28354 0.7 0.240753
Target:  5'- gGGGCgccCGcCCGCGGGCCccgcugcccccaGgAGCCGCc -3'
miRNA:   3'- gCCCGa--GC-GGUGCCCGG------------CgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 28573 0.7 0.233174
Target:  5'- cCGGGCcgaggcgcgcgagCGCCgGCGGGCCGC--CCGCGc -3'
miRNA:   3'- -GCCCGa------------GCGG-UGCCCGGCGucGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 28583 0.79 0.054077
Target:  5'- uCGGGUUaggUGUCugGGGCgGCGGCCGCAa -3'
miRNA:   3'- -GCCCGA---GCGGugCCCGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 28706 0.7 0.229988
Target:  5'- gGGGCcCGCgGCGGGCgCGCAauaaaccCCGCGg -3'
miRNA:   3'- gCCCGaGCGgUGCCCG-GCGUc------GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 28778 0.78 0.061419
Target:  5'- uGGGCcgCGgCGCGGGCgcuCGCGGCCGCGg -3'
miRNA:   3'- gCCCGa-GCgGUGCCCG---GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 28868 0.66 0.420037
Target:  5'- uGGGCcgCGCUcgagcggcuggACGGcGaCGCGGCCGCc -3'
miRNA:   3'- gCCCGa-GCGG-----------UGCC-CgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 28964 0.67 0.369851
Target:  5'- cCGGGCUCaGCUcgcuggacuucgugGCcccgcacuGGGCCGC-GCUGCAg -3'
miRNA:   3'- -GCCCGAG-CGG--------------UG--------CCCGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 29050 0.73 0.13985
Target:  5'- gGGGC-CGCCGCc-GCCGCGGCCGaCAc -3'
miRNA:   3'- gCCCGaGCGGUGccCGGCGUCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 29095 0.72 0.165578
Target:  5'- uGGcGCcUGCCugGGGCCGCGcacgacaccGCCGCc -3'
miRNA:   3'- gCC-CGaGCGGugCCCGGCGU---------CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 29180 0.71 0.200114
Target:  5'- aGGGCccggcgcccUCGCCGCGGcGCCcgcGCGGgCGCGc -3'
miRNA:   3'- gCCCG---------AGCGGUGCC-CGG---CGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 29183 0.7 0.229988
Target:  5'- uGGGCUa-CCugGcGGCCGCgcGGCUGCGc -3'
miRNA:   3'- gCCCGAgcGGugC-CCGGCG--UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 29243 0.78 0.064618
Target:  5'- cCGcGGCgccgCGCgACGGGCCGCcGCCGCu -3'
miRNA:   3'- -GC-CCGa---GCGgUGCCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 29338 0.73 0.13985
Target:  5'- --cGCUCGCCgGCGGGCagCGCGGCCGUc -3'
miRNA:   3'- gccCGAGCGG-UGCCCG--GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 29417 0.75 0.104133
Target:  5'- aCGcGGCg-GCCGCGGGgcCCGCGGCCGUg -3'
miRNA:   3'- -GC-CCGagCGGUGCCC--GGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 29479 0.73 0.150395
Target:  5'- gCGcGGCgCGCCGCGGacGCCGCGgcGCCGCc -3'
miRNA:   3'- -GC-CCGaGCGGUGCC--CGGCGU--CGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.