miRNA display CGI


Results 81 - 100 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 127320 0.69 0.26354
Target:  5'- gGGGCccUGCCGCccgcggGGGCCGgAGCgGCGg -3'
miRNA:   3'- gCCCGa-GCGGUG------CCCGGCgUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 127312 0.68 0.305582
Target:  5'- gGGGgUUGUCGCGGccggcggcggcgcuGCCGCcGCCGCc -3'
miRNA:   3'- gCCCgAGCGGUGCC--------------CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 127274 0.67 0.372146
Target:  5'- cCGGGCccgccCGCCGCGGGg-GCAGCCc-- -3'
miRNA:   3'- -GCCCGa----GCGGUGCCCggCGUCGGcgu -5'
23567 5' -66.4 NC_005261.1 + 127066 0.69 0.269504
Target:  5'- aCGGGU---CCAUGGuGCCGCcGCCGCGc -3'
miRNA:   3'- -GCCCGagcGGUGCC-CGGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 127002 0.7 0.251934
Target:  5'- gGGGCcgacccCGCCGCaGGCgGCGGCCcgaGCAg -3'
miRNA:   3'- gCCCGa-----GCGGUGcCCGgCGUCGG---CGU- -5'
23567 5' -66.4 NC_005261.1 + 126467 0.66 0.436809
Target:  5'- gCGcGCUCGCCucGCGGuaguaccgcGCCGCcaccagcuGCCGCAg -3'
miRNA:   3'- -GCcCGAGCGG--UGCC---------CGGCGu-------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 126334 0.69 0.275576
Target:  5'- cCGGGCcCGCgGCGGGCgCGCgugcgggcgGGCuCGCc -3'
miRNA:   3'- -GCCCGaGCGgUGCCCG-GCG---------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 126289 0.82 0.02995
Target:  5'- cCGGGCgagcCGCCGCGGcgcgggccGCCGCAGCCGCc -3'
miRNA:   3'- -GCCCGa---GCGGUGCC--------CGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 126081 0.71 0.200114
Target:  5'- gGGGCUUgggGCCugcGCGGccGCCGCGGCgGCGg -3'
miRNA:   3'- gCCCGAG---CGG---UGCC--CGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 125922 0.79 0.050088
Target:  5'- gGGGCUCGCCACGcGCacgGUAGCCGCu -3'
miRNA:   3'- gCCCGAGCGGUGCcCGg--CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 125881 0.71 0.204848
Target:  5'- cCGGuuGC-CGCCGC-GGCgGCGGCCGCGc -3'
miRNA:   3'- -GCC--CGaGCGGUGcCCGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 125784 0.69 0.281757
Target:  5'- cCGGGg-CGCCgACGcGGCCGaC-GCCGCAa -3'
miRNA:   3'- -GCCCgaGCGG-UGC-CCGGC-GuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 125770 0.74 0.128721
Target:  5'- gCGGGCUCggcuaaggccaagGCCGCugcgaacggggcuuGGGCCGgGGCCGCc -3'
miRNA:   3'- -GCCCGAG-------------CGGUG--------------CCCGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 125723 0.79 0.051385
Target:  5'- gCGGGCUCGgCugGGGCCGCcgcaagggGGCCGgGg -3'
miRNA:   3'- -GCCCGAGCgGugCCCGGCG--------UCGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 125495 0.72 0.181692
Target:  5'- cCGGGCcCGCCcagggggccgGCGGGcCCGCgcgcccgAGCCGCu -3'
miRNA:   3'- -GCCCGaGCGG----------UGCCC-GGCG-------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 125314 0.68 0.300959
Target:  5'- gCGGGCgcuccgCgGCCuCGGcGuCCGCAGCgCGCAg -3'
miRNA:   3'- -GCCCGa-----G-CGGuGCC-C-GGCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 125263 0.68 0.307581
Target:  5'- uGGugucCUCGuCCGgGGGCCGCuggaagucaGGCCGCGg -3'
miRNA:   3'- gCCc---GAGC-GGUgCCCGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 125234 0.68 0.293803
Target:  5'- uCGGGCUCGCgGgccuaauCGGcGUCGCGGCCcucGCu -3'
miRNA:   3'- -GCCCGAGCGgU-------GCC-CGGCGUCGG---CGu -5'
23567 5' -66.4 NC_005261.1 + 125154 0.69 0.288048
Target:  5'- cCGGcGC-CGUgaUugGGGCCGCGGUCaGCAg -3'
miRNA:   3'- -GCC-CGaGCG--GugCCCGGCGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 124890 0.66 0.420037
Target:  5'- cCGGGUUCcugGCCGCccccGCCGCcacgcgggaAGCCGCGg -3'
miRNA:   3'- -GCCCGAG---CGGUGcc--CGGCG---------UCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.