miRNA display CGI


Results 141 - 160 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 117963 0.67 0.37138
Target:  5'- aCGGGCgcgcucgcUGCCAUGGGCgCGCAcaccggccugacgGCgGCGg -3'
miRNA:   3'- -GCCCGa-------GCGGUGCCCG-GCGU-------------CGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 117900 0.66 0.417555
Target:  5'- gCGGGCgUCGCUcgugcGCGGcucggggcccagucGCCGUuuuucuGCCGCAa -3'
miRNA:   3'- -GCCCG-AGCGG-----UGCC--------------CGGCGu-----CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 117709 0.68 0.294448
Target:  5'- uGaGGC-CgGCgCGCGGGCCcgcaaGCGGCCGCGc -3'
miRNA:   3'- gC-CCGaG-CG-GUGCCCGG-----CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 117014 0.74 0.114966
Target:  5'- aCGGGCcCGCCGuCGcGGCCGgGGCCaGCGu -3'
miRNA:   3'- -GCCCGaGCGGU-GC-CCGGCgUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 116489 0.68 0.306914
Target:  5'- gGGGCggGCgCGCGGuauaaagagcgccGCCGCGGCgGCGc -3'
miRNA:   3'- gCCCGagCG-GUGCC-------------CGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 116469 0.7 0.232108
Target:  5'- gGcGGCUCGCC-CGGcGCgcgcuccaggcgcaGCAGCCGCGu -3'
miRNA:   3'- gC-CCGAGCGGuGCC-CGg-------------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 116417 0.72 0.165578
Target:  5'- gCGcGCcCGCCGCGGGCCcggcccggccgGCGGCUGCGg -3'
miRNA:   3'- -GCcCGaGCGGUGCCCGG-----------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 116357 0.69 0.269504
Target:  5'- gCGGGUUCGUC-CGuGCCGCcGCgCGCAa -3'
miRNA:   3'- -GCCCGAGCGGuGCcCGGCGuCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 116355 0.67 0.364534
Target:  5'- gGGGC-C-CCGCGGGCgCGCGuUCGCGa -3'
miRNA:   3'- gCCCGaGcGGUGCCCG-GCGUcGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 115484 0.81 0.041864
Target:  5'- gCGGGCUCgGCCGCGGcggcgcGCCGCAGCCcccGCAc -3'
miRNA:   3'- -GCCCGAG-CGGUGCC------CGGCGUCGG---CGU- -5'
23567 5' -66.4 NC_005261.1 + 115467 0.71 0.190933
Target:  5'- gGGGCcCGCCcccagacgcgUGGGCCGCcGCCGCc -3'
miRNA:   3'- gCCCGaGCGGu---------GCCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 115401 0.79 0.050088
Target:  5'- gCGGGUcgUCGaCCGCGGGCgGCAGCCGgGg -3'
miRNA:   3'- -GCCCG--AGC-GGUGCCCGgCGUCGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 115283 0.69 0.269504
Target:  5'- uGGGa----CGCGGGCaGCAGCCGCAa -3'
miRNA:   3'- gCCCgagcgGUGCCCGgCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 115025 0.69 0.257684
Target:  5'- gCGcGGC-CGCCgcuGCGGGCCccGCGGCgCGCu -3'
miRNA:   3'- -GC-CCGaGCGG---UGCCCGG--CGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 114991 0.66 0.420037
Target:  5'- gCGGGCcggcCGCCGC-GGCCcCGGCCccGCGg -3'
miRNA:   3'- -GCCCGa---GCGGUGcCCGGcGUCGG--CGU- -5'
23567 5' -66.4 NC_005261.1 + 114736 0.7 0.228934
Target:  5'- aGGGCccgCGCCugcccagGCGGGcCCGCGcacucccGCCGCGg -3'
miRNA:   3'- gCCCGa--GCGG-------UGCCC-GGCGU-------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 114343 0.71 0.186482
Target:  5'- -uGGCUCGagcggCGCGuGGCCGCGGCCGa- -3'
miRNA:   3'- gcCCGAGCg----GUGC-CCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 113288 0.69 0.273134
Target:  5'- aGGGCgugguccucucgcUGCCGCGGGCCugggccCGGCUGCGc -3'
miRNA:   3'- gCCCGa------------GCGGUGCCCGGc-----GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 113015 0.67 0.339466
Target:  5'- uGGGCggGCaguaccccacagaGCGGGCCGCGcGCgGCGu -3'
miRNA:   3'- gCCCGagCGg------------UGCCCGGCGU-CGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 111619 0.67 0.372146
Target:  5'- uGGGCUgCGgCGCcGuGCCGCcGCCGCc -3'
miRNA:   3'- gCCCGA-GCgGUGcC-CGGCGuCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.