miRNA display CGI


Results 81 - 100 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 66445 0.74 0.123772
Target:  5'- cCGGGCcgCGCUcagcugcgaGCGGGCCGCGGuCCGg- -3'
miRNA:   3'- -GCCCGa-GCGG---------UGCCCGGCGUC-GGCgu -5'
23567 5' -66.4 NC_005261.1 + 134539 0.74 0.123772
Target:  5'- cCGGuGCUCucgGCUgcaGCGGGCCGCGGCCuGCc -3'
miRNA:   3'- -GCC-CGAG---CGG---UGCCCGGCGUCGG-CGu -5'
23567 5' -66.4 NC_005261.1 + 79712 0.74 0.124993
Target:  5'- uGGGCUCGauccgccuccuggaCGCGGGCgccaaaaGCGGCCGCGc -3'
miRNA:   3'- gCCCGAGCg-------------GUGCCCGg------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 7912 0.74 0.126844
Target:  5'- cCGGGC-CGuCCAUGGcGCUGCAGCgGCu -3'
miRNA:   3'- -GCCCGaGC-GGUGCC-CGGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 98186 0.74 0.126844
Target:  5'- aCGGGCccgUCGCCACGcuGGUCGCGGUCGa- -3'
miRNA:   3'- -GCCCG---AGCGGUGC--CCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 93363 0.74 0.129037
Target:  5'- gCGGcGCUCGCgGCGgcgcucuuccucgcGGCUGCGGCUGCGg -3'
miRNA:   3'- -GCC-CGAGCGgUGC--------------CCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 20596 0.74 0.129987
Target:  5'- gGGGCgCGgCGCGGGCCcggcGCGGUCGCu -3'
miRNA:   3'- gCCCGaGCgGUGCCCGG----CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 34800 0.74 0.117834
Target:  5'- gCGaGGCgcgCGCgCGCGuGGCCGCGGcCCGCGc -3'
miRNA:   3'- -GC-CCGa--GCG-GUGC-CCGGCGUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 37518 0.74 0.116967
Target:  5'- gCGGcGCg-GCCGCGGcucgggcggcgcgcGCCGCGGCCGCGg -3'
miRNA:   3'- -GCC-CGagCGGUGCC--------------CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 117014 0.74 0.114966
Target:  5'- aCGGGCcCGCCGuCGcGGCCGgGGCCaGCGu -3'
miRNA:   3'- -GCCCGaGCGGU-GC-CCGGCgUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 35573 0.75 0.100573
Target:  5'- uGGGCgccgcggaggaggUGCUGCGGGCCGCggacgaAGCCGCGg -3'
miRNA:   3'- gCCCGa------------GCGGUGCCCGGCG------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 35690 0.75 0.101578
Target:  5'- cCGGGC--GCCugGGGCCGCAggcggccaaGCUGCAc -3'
miRNA:   3'- -GCCCGagCGGugCCCGGCGU---------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 98837 0.75 0.103875
Target:  5'- gGGGCucgggUCGCCGCcaGGGCCGCccuccccGGCCGCc -3'
miRNA:   3'- gCCCG-----AGCGGUG--CCCGGCG-------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 20294 0.75 0.104133
Target:  5'- --aGCgagCGCgCACGGGCCGCAGCCGg- -3'
miRNA:   3'- gccCGa--GCG-GUGCCCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 7040 0.75 0.104133
Target:  5'- gGcGGCgaccgCGCCGCGGG-CGUAGCCGCu -3'
miRNA:   3'- gC-CCGa----GCGGUGCCCgGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 133934 0.75 0.104133
Target:  5'- aCGcGGCg-GCCGCGGGgcCCGCGGCCGUg -3'
miRNA:   3'- -GC-CCGagCGGUGCCC--GGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 31077 0.75 0.112163
Target:  5'- aGGcGCUgGCCGCcuccauGGCCGCGGCCGUg -3'
miRNA:   3'- gCC-CGAgCGGUGc-----CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 106783 0.75 0.112163
Target:  5'- cCGGGCUCGuCCucgcCGGGCgGC-GCCGCc -3'
miRNA:   3'- -GCCCGAGC-GGu---GCCCGgCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 3152 0.75 0.112163
Target:  5'- cCGGGCcgcgagccCGCCgccggaaagcgGCGGGCCGCuGCCGCc -3'
miRNA:   3'- -GCCCGa-------GCGG-----------UGCCCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 9199 0.74 0.129987
Target:  5'- uGGGCgucUGCCGCGuaGGCUacggGCAGCCGCAc -3'
miRNA:   3'- gCCCGa--GCGGUGC--CCGG----CGUCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.