miRNA display CGI


Results 121 - 140 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 29479 0.73 0.150395
Target:  5'- gCGcGGCgCGCCGCGGacGCCGCGgcGCCGCc -3'
miRNA:   3'- -GC-CCGaGCGGUGCC--CGGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 30037 0.73 0.150395
Target:  5'- uGGcGCagcucucgCGCC-CGGaGCCGCGGCCGCGc -3'
miRNA:   3'- gCC-CGa-------GCGGuGCC-CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 84650 0.74 0.133201
Target:  5'- uGGGg-CGCCGCcGGcCCGCGGCCGCu -3'
miRNA:   3'- gCCCgaGCGGUGcCC-GGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 13976 0.74 0.132876
Target:  5'- gCGGGCggCGCCGCGcGGCgccugccCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGa-GCGGUGC-CCG-------GCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 69957 0.74 0.129987
Target:  5'- gGGGCccCGCCGCGcGGgCGCAGgCGCGc -3'
miRNA:   3'- gCCCGa-GCGGUGC-CCgGCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 37518 0.74 0.116967
Target:  5'- gCGGcGCg-GCCGCGGcucgggcggcgcgcGCCGCGGCCGCGg -3'
miRNA:   3'- -GCC-CGagCGGUGCC--------------CGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 34800 0.74 0.117834
Target:  5'- gCGaGGCgcgCGCgCGCGuGGCCGCGGcCCGCGc -3'
miRNA:   3'- -GC-CCGa--GCG-GUGC-CCGGCGUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 79849 0.74 0.120769
Target:  5'- gCGGGUUCGcCCugGaGGCCGaCGucGCCGCAc -3'
miRNA:   3'- -GCCCGAGC-GGugC-CCGGC-GU--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 106440 0.74 0.120769
Target:  5'- gCGcGGCgcacugCGCCGCGGGCagcacCGCGGCgCGCAg -3'
miRNA:   3'- -GC-CCGa-----GCGGUGCCCG-----GCGUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 132787 0.74 0.120769
Target:  5'- gGGGCgcugUUGCCGCc-GCCGCGGCCGCGg -3'
miRNA:   3'- gCCCG----AGCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 66445 0.74 0.123772
Target:  5'- cCGGGCcgCGCUcagcugcgaGCGGGCCGCGGuCCGg- -3'
miRNA:   3'- -GCCCGa-GCGG---------UGCCCGGCGUC-GGCgu -5'
23567 5' -66.4 NC_005261.1 + 134539 0.74 0.123772
Target:  5'- cCGGuGCUCucgGCUgcaGCGGGCCGCGGCCuGCc -3'
miRNA:   3'- -GCC-CGAG---CGG---UGCCCGGCGUCGG-CGu -5'
23567 5' -66.4 NC_005261.1 + 66990 0.73 0.154068
Target:  5'- gGGGCUcggcugCGCCGCcgaGGGCCGCGuGCgCGCGc -3'
miRNA:   3'- gCCCGA------GCGGUG---CCCGGCGU-CG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 79712 0.74 0.124993
Target:  5'- uGGGCUCGauccgccuccuggaCGCGGGCgccaaaaGCGGCCGCGc -3'
miRNA:   3'- gCCCGAGCg-------------GUGCCCGg------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 7912 0.74 0.126844
Target:  5'- cCGGGC-CGuCCAUGGcGCUGCAGCgGCu -3'
miRNA:   3'- -GCCCGaGC-GGUGCC-CGGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 98186 0.74 0.126844
Target:  5'- aCGGGCccgUCGCCACGcuGGUCGCGGUCGa- -3'
miRNA:   3'- -GCCCG---AGCGGUGC--CCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 93363 0.74 0.129037
Target:  5'- gCGGcGCUCGCgGCGgcgcucuuccucgcGGCUGCGGCUGCGg -3'
miRNA:   3'- -GCC-CGAGCGgUGC--------------CCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 20596 0.74 0.129987
Target:  5'- gGGGCgCGgCGCGGGCCcggcGCGGUCGCu -3'
miRNA:   3'- gCCCGaGCgGUGCCCGG----CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 9199 0.74 0.129987
Target:  5'- uGGGCgucUGCCGCGuaGGCUacggGCAGCCGCAc -3'
miRNA:   3'- gCCCGa--GCGGUGC--CCGG----CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 92608 0.74 0.129987
Target:  5'- gCGGGCcCGCCGCGccgcGCCGC-GCCGCc -3'
miRNA:   3'- -GCCCGaGCGGUGCc---CGGCGuCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.