miRNA display CGI


Results 141 - 160 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 19998 0.73 0.143287
Target:  5'- aCGGcGUagGCCGC-GGCCGCGGCCGUc -3'
miRNA:   3'- -GCC-CGagCGGUGcCCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 107948 0.73 0.143287
Target:  5'- gCGGGCcagCGUCcaggcgggcgcGCGGGCCGCcgcGCCGCGc -3'
miRNA:   3'- -GCCCGa--GCGG-----------UGCCCGGCGu--CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 20596 0.74 0.129987
Target:  5'- gGGGCgCGgCGCGGGCCcggcGCGGUCGCu -3'
miRNA:   3'- gCCCGaGCgGUGCCCGG----CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 93363 0.74 0.129037
Target:  5'- gCGGcGCUCGCgGCGgcgcucuuccucgcGGCUGCGGCUGCGg -3'
miRNA:   3'- -GCC-CGAGCGgUGC--------------CCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 98186 0.74 0.126844
Target:  5'- aCGGGCccgUCGCCACGcuGGUCGCGGUCGa- -3'
miRNA:   3'- -GCCCG---AGCGGUGC--CCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 7912 0.74 0.126844
Target:  5'- cCGGGC-CGuCCAUGGcGCUGCAGCgGCu -3'
miRNA:   3'- -GCCCGaGC-GGUGCC-CGGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 79712 0.74 0.124993
Target:  5'- uGGGCUCGauccgccuccuggaCGCGGGCgccaaaaGCGGCCGCGc -3'
miRNA:   3'- gCCCGAGCg-------------GUGCCCGg------CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 134539 0.74 0.123772
Target:  5'- cCGGuGCUCucgGCUgcaGCGGGCCGCGGCCuGCc -3'
miRNA:   3'- -GCC-CGAG---CGG---UGCCCGGCGUCGG-CGu -5'
23567 5' -66.4 NC_005261.1 + 66445 0.74 0.123772
Target:  5'- cCGGGCcgCGCUcagcugcgaGCGGGCCGCGGuCCGg- -3'
miRNA:   3'- -GCCCGa-GCGG---------UGCCCGGCGUC-GGCgu -5'
23567 5' -66.4 NC_005261.1 + 132787 0.74 0.120769
Target:  5'- gGGGCgcugUUGCCGCc-GCCGCGGCCGCGg -3'
miRNA:   3'- gCCCG----AGCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 9199 0.74 0.129987
Target:  5'- uGGGCgucUGCCGCGuaGGCUacggGCAGCCGCAc -3'
miRNA:   3'- gCCCGa--GCGGUGC--CCGG----CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 92608 0.74 0.129987
Target:  5'- gCGGGCcCGCCGCGccgcGCCGC-GCCGCc -3'
miRNA:   3'- -GCCCGaGCGGUGCc---CGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 49144 0.73 0.143287
Target:  5'- --aGCgCGCC-CGGGCCGCAGCCGg- -3'
miRNA:   3'- gccCGaGCGGuGCCCGGCGUCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 29338 0.73 0.13985
Target:  5'- --cGCUCGCCgGCGGGCagCGCGGCCGUc -3'
miRNA:   3'- gccCGAGCGG-UGCCCG--GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 133568 0.73 0.13985
Target:  5'- gGGGC-CGCCGCc-GCCGCGGCCGaCAc -3'
miRNA:   3'- gCCCGaGCGGUGccCGGCGUCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 105914 0.73 0.136488
Target:  5'- cCGGGC--GCCGC-GGCCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGagCGGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 53937 0.73 0.136488
Target:  5'- uCGGcGC-CGCCG-GGGCCGgGGCCGCc -3'
miRNA:   3'- -GCC-CGaGCGGUgCCCGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 84650 0.74 0.133201
Target:  5'- uGGGg-CGCCGCcGGcCCGCGGCCGCu -3'
miRNA:   3'- gCCCgaGCGGUGcCC-GGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 13976 0.74 0.132876
Target:  5'- gCGGGCggCGCCGCGcGGCgccugccCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGa-GCGGUGC-CCG-------GCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 69957 0.74 0.129987
Target:  5'- gGGGCccCGCCGCGcGGgCGCAGgCGCGc -3'
miRNA:   3'- gCCCGa-GCGGUGC-CCgGCGUCgGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.