Results 161 - 180 of 919 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 105914 | 0.73 | 0.136488 |
Target: 5'- cCGGGC--GCCGC-GGCCGCGGCgGCGg -3' miRNA: 3'- -GCCCGagCGGUGcCCGGCGUCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 53937 | 0.73 | 0.136488 |
Target: 5'- uCGGcGC-CGCCG-GGGCCGgGGCCGCc -3' miRNA: 3'- -GCC-CGaGCGGUgCCCGGCgUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 84650 | 0.74 | 0.133201 |
Target: 5'- uGGGg-CGCCGCcGGcCCGCGGCCGCu -3' miRNA: 3'- gCCCgaGCGGUGcCC-GGCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 13976 | 0.74 | 0.132876 |
Target: 5'- gCGGGCggCGCCGCGcGGCgccugccCGCGGCgGCGg -3' miRNA: 3'- -GCCCGa-GCGGUGC-CCG-------GCGUCGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 69957 | 0.74 | 0.129987 |
Target: 5'- gGGGCccCGCCGCGcGGgCGCAGgCGCGc -3' miRNA: 3'- gCCCGa-GCGGUGC-CCgGCGUCgGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 92608 | 0.74 | 0.129987 |
Target: 5'- gCGGGCcCGCCGCGccgcGCCGC-GCCGCc -3' miRNA: 3'- -GCCCGaGCGGUGCc---CGGCGuCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 9199 | 0.74 | 0.129987 |
Target: 5'- uGGGCgucUGCCGCGuaGGCUacggGCAGCCGCAc -3' miRNA: 3'- gCCCGa--GCGGUGC--CCGG----CGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 20596 | 0.74 | 0.129987 |
Target: 5'- gGGGCgCGgCGCGGGCCcggcGCGGUCGCu -3' miRNA: 3'- gCCCGaGCgGUGCCCGG----CGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 93363 | 0.74 | 0.129037 |
Target: 5'- gCGGcGCUCGCgGCGgcgcucuuccucgcGGCUGCGGCUGCGg -3' miRNA: 3'- -GCC-CGAGCGgUGC--------------CCGGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 133568 | 0.73 | 0.13985 |
Target: 5'- gGGGC-CGCCGCc-GCCGCGGCCGaCAc -3' miRNA: 3'- gCCCGaGCGGUGccCGGCGUCGGC-GU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 98186 | 0.74 | 0.126844 |
Target: 5'- aCGGGCccgUCGCCACGcuGGUCGCGGUCGa- -3' miRNA: 3'- -GCCCG---AGCGGUGC--CCGGCGUCGGCgu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 15221 | 0.73 | 0.146802 |
Target: 5'- uCGcGGa-CGCCAC-GGCCGCGGCCGUAg -3' miRNA: 3'- -GC-CCgaGCGGUGcCCGGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 104750 | 0.73 | 0.146802 |
Target: 5'- gCGGGCccCGCgaGCGGGCC-CGGCUGCGg -3' miRNA: 3'- -GCCCGa-GCGg-UGCCCGGcGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 18699 | 0.73 | 0.146802 |
Target: 5'- gGGGCcuugcUCgGCCGCGGGgaCCGgGGCCGCGu -3' miRNA: 3'- gCCCG-----AG-CGGUGCCC--GGCgUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 90603 | 0.73 | 0.143287 |
Target: 5'- gCGGuGCgCGCgGC-GGCCGCGGCCGCc -3' miRNA: 3'- -GCC-CGaGCGgUGcCCGGCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 32990 | 0.73 | 0.143287 |
Target: 5'- gCGGauGC-CGCCGCagaucacGGCCGCGGCCGCGg -3' miRNA: 3'- -GCC--CGaGCGGUGc------CCGGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 19998 | 0.73 | 0.143287 |
Target: 5'- aCGGcGUagGCCGC-GGCCGCGGCCGUc -3' miRNA: 3'- -GCC-CGagCGGUGcCCGGCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 107948 | 0.73 | 0.143287 |
Target: 5'- gCGGGCcagCGUCcaggcgggcgcGCGGGCCGCcgcGCCGCGc -3' miRNA: 3'- -GCCCGa--GCGG-----------UGCCCGGCGu--CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 49144 | 0.73 | 0.143287 |
Target: 5'- --aGCgCGCC-CGGGCCGCAGCCGg- -3' miRNA: 3'- gccCGaGCGGuGCCCGGCGUCGGCgu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 29338 | 0.73 | 0.13985 |
Target: 5'- --cGCUCGCCgGCGGGCagCGCGGCCGUc -3' miRNA: 3'- gccCGAGCGG-UGCCCG--GCGUCGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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