miRNA display CGI


Results 81 - 100 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 86856 0.66 0.411798
Target:  5'- cCGGcGCUCaacGCCGcCGGG-CGCGGCgGCc -3'
miRNA:   3'- -GCC-CGAG---CGGU-GCCCgGCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 15968 0.66 0.411798
Target:  5'- gCGGGCgggggaggGCC-CGGGCCGCucacccgggcAGCgCGCu -3'
miRNA:   3'- -GCCCGag------CGGuGCCCGGCG----------UCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 133617 0.66 0.411798
Target:  5'- uCGcGCUggCGCUGUGGGCCGCGcucGCCGCGc -3'
miRNA:   3'- -GCcCGA--GCGGUGCCCGGCGU---CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 47923 0.66 0.403659
Target:  5'- gCGcGGC-CGUCACGucCCGCGcGCCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGUGCccGGCGU-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 70366 0.66 0.403659
Target:  5'- gGcGGCgCGCCuccACGGcGCCGCuGGCCGaCAc -3'
miRNA:   3'- gC-CCGaGCGG---UGCC-CGGCG-UCGGC-GU- -5'
23567 5' -66.4 NC_005261.1 + 136444 0.66 0.395624
Target:  5'- gCGGGCgUCG-CAgGGGCaCGCGGCaGCc -3'
miRNA:   3'- -GCCCG-AGCgGUgCCCG-GCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 94266 0.66 0.395624
Target:  5'- aGGGCggCGCCGCGaGGCucuuggCGCAGa-GCAu -3'
miRNA:   3'- gCCCGa-GCGGUGC-CCG------GCGUCggCGU- -5'
23567 5' -66.4 NC_005261.1 + 119033 0.66 0.420037
Target:  5'- gCGGaCgUCGCCgACGGuaacgcgcCCGCGGCCGCGc -3'
miRNA:   3'- -GCCcG-AGCGG-UGCCc-------GGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 59147 0.66 0.420037
Target:  5'- -cGGCgCGCCcCGGGCgCGCGGCgccCGCc -3'
miRNA:   3'- gcCCGaGCGGuGCCCG-GCGUCG---GCGu -5'
23567 5' -66.4 NC_005261.1 + 3821 0.66 0.428375
Target:  5'- gCGcGCU-GCCGCGGGCC-CGGgCGCu -3'
miRNA:   3'- -GCcCGAgCGGUGCCCGGcGUCgGCGu -5'
23567 5' -66.4 NC_005261.1 + 31869 0.67 0.387692
Target:  5'- uCGGGCccggCGCCuucGCGcGcGCCGaGGCCGCu -3'
miRNA:   3'- -GCCCGa---GCGG---UGC-C-CGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 30876 0.67 0.382984
Target:  5'- gGGGC-CGCCggcccugccgcccgaGCucGGGCUGgGGCCGCc -3'
miRNA:   3'- gCCCGaGCGG---------------UG--CCCGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 84662 0.67 0.379866
Target:  5'- uGGcGC-CGCC-CGcGcCCGCGGCCGCGc -3'
miRNA:   3'- gCC-CGaGCGGuGCcC-GGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 13554 0.67 0.379089
Target:  5'- aCGGcGCuUCGUCGaagaacuCGGaCUGCAGCCGCAc -3'
miRNA:   3'- -GCC-CG-AGCGGU-------GCCcGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 127274 0.67 0.372146
Target:  5'- cCGGGCccgccCGCCGCGGGg-GCAGCCc-- -3'
miRNA:   3'- -GCCCGa----GCGGUGCCCggCGUCGGcgu -5'
23567 5' -66.4 NC_005261.1 + 109613 0.66 0.436809
Target:  5'- cCGcGCUCGCCAgCGcuauaaaggcGGCuUGCGGCCGCc -3'
miRNA:   3'- -GCcCGAGCGGU-GC----------CCG-GCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 81194 0.66 0.436809
Target:  5'- gGGGCacgGCCGCGcGGgCGCgAGCCGg- -3'
miRNA:   3'- gCCCGag-CGGUGC-CCgGCG-UCGGCgu -5'
23567 5' -66.4 NC_005261.1 + 126467 0.66 0.436809
Target:  5'- gCGcGCUCGCCucGCGGuaguaccgcGCCGCcaccagcuGCCGCAg -3'
miRNA:   3'- -GCcCGAGCGG--UGCC---------CGGCGu-------CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 29594 0.66 0.436809
Target:  5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3'
miRNA:   3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5'
23567 5' -66.4 NC_005261.1 + 68854 0.66 0.428375
Target:  5'- gCGGGgaCGCCcucuGCCGCGGCUGUg -3'
miRNA:   3'- -GCCCgaGCGGugccCGGCGUCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.