Results 101 - 120 of 919 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23567 | 5' | -66.4 | NC_005261.1 | + | 49020 | 0.67 | 0.379866 |
Target: 5'- -aGGCUCucagcgGCgGCGGGCacgcgcagGCAGCCGCc -3' miRNA: 3'- gcCCGAG------CGgUGCCCGg-------CGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 111619 | 0.67 | 0.372146 |
Target: 5'- uGGGCUgCGgCGCcGuGCCGCcGCCGCc -3' miRNA: 3'- gCCCGA-GCgGUGcC-CGGCGuCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 33838 | 0.67 | 0.372146 |
Target: 5'- gCGGGCccccuggCGCUggGCGGGCCGgGagggccccccGCCGCc -3' miRNA: 3'- -GCCCGa------GCGG--UGCCCGGCgU----------CGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 99708 | 0.67 | 0.372146 |
Target: 5'- --aGCUcCGCCACGGucgcGCgCGUGGCCGCGu -3' miRNA: 3'- gccCGA-GCGGUGCC----CG-GCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 117963 | 0.67 | 0.37138 |
Target: 5'- aCGGGCgcgcucgcUGCCAUGGGCgCGCAcaccggccugacgGCgGCGg -3' miRNA: 3'- -GCCCGa-------GCGGUGCCCG-GCGU-------------CGgCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 47923 | 0.66 | 0.403659 |
Target: 5'- gCGcGGC-CGUCACGucCCGCGcGCCGCGc -3' miRNA: 3'- -GC-CCGaGCGGUGCccGGCGU-CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 133617 | 0.66 | 0.411798 |
Target: 5'- uCGcGCUggCGCUGUGGGCCGCGcucGCCGCGc -3' miRNA: 3'- -GCcCGA--GCGGUGCCCGGCGU---CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 109613 | 0.66 | 0.436809 |
Target: 5'- cCGcGCUCGCCAgCGcuauaaaggcGGCuUGCGGCCGCc -3' miRNA: 3'- -GCcCGAGCGGU-GC----------CCG-GCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 81194 | 0.66 | 0.436809 |
Target: 5'- gGGGCacgGCCGCGcGGgCGCgAGCCGg- -3' miRNA: 3'- gCCCGag-CGGUGC-CCgGCG-UCGGCgu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 126467 | 0.66 | 0.436809 |
Target: 5'- gCGcGCUCGCCucGCGGuaguaccgcGCCGCcaccagcuGCCGCAg -3' miRNA: 3'- -GCcCGAGCGG--UGCC---------CGGCGu-------CGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 29594 | 0.66 | 0.436809 |
Target: 5'- aGGGCU-GCCG-GGGCCaCAGCuCGUu -3' miRNA: 3'- gCCCGAgCGGUgCCCGGcGUCG-GCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 68854 | 0.66 | 0.428375 |
Target: 5'- gCGGGgaCGCCcucuGCCGCGGCUGUg -3' miRNA: 3'- -GCCCgaGCGGugccCGGCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 3821 | 0.66 | 0.428375 |
Target: 5'- gCGcGCU-GCCGCGGGCC-CGGgCGCu -3' miRNA: 3'- -GCcCGAgCGGUGCCCGGcGUCgGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 59147 | 0.66 | 0.420037 |
Target: 5'- -cGGCgCGCCcCGGGCgCGCGGCgccCGCc -3' miRNA: 3'- gcCCGaGCGGuGCCCG-GCGUCG---GCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 119033 | 0.66 | 0.420037 |
Target: 5'- gCGGaCgUCGCCgACGGuaacgcgcCCGCGGCCGCGc -3' miRNA: 3'- -GCCcG-AGCGG-UGCCc-------GGCGUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 41778 | 0.66 | 0.420037 |
Target: 5'- aGGuGCUcuucCGUCACGGGCa--GGCCGUAc -3' miRNA: 3'- gCC-CGA----GCGGUGCCCGgcgUCGGCGU- -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 123197 | 0.66 | 0.419208 |
Target: 5'- uGGGCggacccagcCGCCGCGuaagcgcGGCCugccgccuaGCGGCCGCc -3' miRNA: 3'- gCCCGa--------GCGGUGC-------CCGG---------CGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 132020 | 0.66 | 0.411798 |
Target: 5'- uGGGCcgcCGUCACGGa-CGUGGCCGCc -3' miRNA: 3'- gCCCGa--GCGGUGCCcgGCGUCGGCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 86856 | 0.66 | 0.411798 |
Target: 5'- cCGGcGCUCaacGCCGcCGGG-CGCGGCgGCc -3' miRNA: 3'- -GCC-CGAG---CGGU-GCCCgGCGUCGgCGu -5' |
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23567 | 5' | -66.4 | NC_005261.1 | + | 15968 | 0.66 | 0.411798 |
Target: 5'- gCGGGCgggggaggGCC-CGGGCCGCucacccgggcAGCgCGCu -3' miRNA: 3'- -GCCCGag------CGGuGCCCGGCG----------UCG-GCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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