miRNA display CGI


Results 121 - 140 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 58635 0.66 0.428375
Target:  5'- aGGGCgcgcUCGCCGCccGCCaGCAGCaagaaGCAg -3'
miRNA:   3'- gCCCG----AGCGGUGccCGG-CGUCGg----CGU- -5'
23567 5' -66.4 NC_005261.1 + 124890 0.66 0.420037
Target:  5'- cCGGGUUCcugGCCGCccccGCCGCcacgcgggaAGCCGCGg -3'
miRNA:   3'- -GCCCGAG---CGGUGcc--CGGCG---------UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 118812 0.67 0.372146
Target:  5'- uGGGCgucugCGcCCugGGcGCgGCAcuGCCGCu -3'
miRNA:   3'- gCCCGa----GC-GGugCC-CGgCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 98311 0.67 0.372146
Target:  5'- gGGGCgggCGCCGCc-GCCaGCGGCgGCGc -3'
miRNA:   3'- gCCCGa--GCGGUGccCGG-CGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 87973 0.67 0.373681
Target:  5'- gCGGGCUcgguauuuaaccucgCGCCggcuccucccccgGCGGGCCcguuaaaGCGGCCgGCGg -3'
miRNA:   3'- -GCCCGA---------------GCGG-------------UGCCCGG-------CGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 129713 0.66 0.420037
Target:  5'- gGaGGCagGcCCGCcGGCUGCAGCgGCAg -3'
miRNA:   3'- gC-CCGagC-GGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 2790 0.66 0.419208
Target:  5'- gGGGCU-GCCGCcggcggccgggagGGGCCggGCGGCCcCAg -3'
miRNA:   3'- gCCCGAgCGGUG-------------CCCGG--CGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 106916 0.66 0.411798
Target:  5'- cCGcGGCgCGCUGCaGGGCCGcCAGCgacaCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGUG-CCCGGC-GUCG----GCGU- -5'
23567 5' -66.4 NC_005261.1 + 17134 0.66 0.411798
Target:  5'- gCGGGUaCGCCgGCGGGUcgaCGUAGaCCGUc -3'
miRNA:   3'- -GCCCGaGCGG-UGCCCG---GCGUC-GGCGu -5'
23567 5' -66.4 NC_005261.1 + 3543 0.66 0.411798
Target:  5'- uCGGcGCgcagCGCgGCGGG-CGCGgcGCCGCu -3'
miRNA:   3'- -GCC-CGa---GCGgUGCCCgGCGU--CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 90769 0.66 0.403659
Target:  5'- cCGaGGC-CGCCGa-GGCCGCuGCgGCGg -3'
miRNA:   3'- -GC-CCGaGCGGUgcCCGGCGuCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 100043 0.66 0.403659
Target:  5'- gCGGGCgucaGCUcgaGCGcGCCGCcGCCGCc -3'
miRNA:   3'- -GCCCGag--CGG---UGCcCGGCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 44826 0.66 0.395624
Target:  5'- --cGCa-GCCGCa-GCCGCAGCCGCAg -3'
miRNA:   3'- gccCGagCGGUGccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 136444 0.66 0.395624
Target:  5'- gCGGGCgUCG-CAgGGGCaCGCGGCaGCc -3'
miRNA:   3'- -GCCCG-AGCgGUgCCCG-GCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 65806 0.66 0.395624
Target:  5'- gCGGGUcggggUGCC-CGGGCgGCGG-CGCGa -3'
miRNA:   3'- -GCCCGa----GCGGuGCCCGgCGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 33069 0.67 0.387692
Target:  5'- cCGGGgaCGCgGCGcuGGCgGCcGCCGCc -3'
miRNA:   3'- -GCCCgaGCGgUGC--CCGgCGuCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 42635 0.67 0.387692
Target:  5'- gGGGaCUCgGCC----GCCGCGGCCGCGc -3'
miRNA:   3'- gCCC-GAG-CGGugccCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 98361 0.67 0.387692
Target:  5'- gGGGgUgGgCGCGGGCUcugGCGGgCGCAa -3'
miRNA:   3'- gCCCgAgCgGUGCCCGG---CGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 104173 0.67 0.379866
Target:  5'- gCGGGCgcCGCgCGCGGGUCGuCGGgCGgGa -3'
miRNA:   3'- -GCCCGa-GCG-GUGCCCGGC-GUCgGCgU- -5'
23567 5' -66.4 NC_005261.1 + 62297 0.67 0.379866
Target:  5'- uCGGcGC-CG-CGCGGGCgCGCGGCgGCc -3'
miRNA:   3'- -GCC-CGaGCgGUGCCCG-GCGUCGgCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.