miRNA display CGI


Results 141 - 160 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 77457 0.68 0.335174
Target:  5'- -aGGCcCGggGCGcGGCUGCAGCCGCGc -3'
miRNA:   3'- gcCCGaGCggUGC-CCGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 106414 0.67 0.342349
Target:  5'- gCGGcGCU-GCaGCGGGCCGCGGUC-CAc -3'
miRNA:   3'- -GCC-CGAgCGgUGCCCGGCGUCGGcGU- -5'
23567 5' -66.4 NC_005261.1 + 107878 0.67 0.372146
Target:  5'- gCGcGCUCGCgccCGCGGcccgcuuguCCGCGGCCGCGg -3'
miRNA:   3'- -GCcCGAGCG---GUGCCc--------GGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 33838 0.67 0.372146
Target:  5'- gCGGGCccccuggCGCUggGCGGGCCGgGagggccccccGCCGCc -3'
miRNA:   3'- -GCCCGa------GCGG--UGCCCGGCgU----------CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 13554 0.67 0.379089
Target:  5'- aCGGcGCuUCGUCGaagaacuCGGaCUGCAGCCGCAc -3'
miRNA:   3'- -GCC-CG-AGCGGU-------GCCcGGCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 62297 0.67 0.379866
Target:  5'- uCGGcGC-CG-CGCGGGCgCGCGGCgGCc -3'
miRNA:   3'- -GCC-CGaGCgGUGCCCG-GCGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 30876 0.67 0.382984
Target:  5'- gGGGC-CGCCggcccugccgcccgaGCucGGGCUGgGGCCGCc -3'
miRNA:   3'- gCCCGaGCGG---------------UG--CCCGGCgUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 98361 0.67 0.387692
Target:  5'- gGGGgUgGgCGCGGGCUcugGCGGgCGCAa -3'
miRNA:   3'- gCCCgAgCgGUGCCCGG---CGUCgGCGU- -5'
23567 5' -66.4 NC_005261.1 + 94858 0.67 0.387692
Target:  5'- uCGGcGCUCGCgCAcggccCGGGCgGgCGGcCCGCGu -3'
miRNA:   3'- -GCC-CGAGCG-GU-----GCCCGgC-GUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 122074 0.67 0.387692
Target:  5'- aCGGG-UCGCgCACGcccGCgCGCAGCCaGCAg -3'
miRNA:   3'- -GCCCgAGCG-GUGCc--CG-GCGUCGG-CGU- -5'
23567 5' -66.4 NC_005261.1 + 117963 0.67 0.37138
Target:  5'- aCGGGCgcgcucgcUGCCAUGGGCgCGCAcaccggccugacgGCgGCGg -3'
miRNA:   3'- -GCCCGa-------GCGGUGCCCG-GCGU-------------CGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 101518 0.67 0.364534
Target:  5'- cCGGcGCccUCGUCGCGGucgcgcGCCGCcucGGCCGCc -3'
miRNA:   3'- -GCC-CG--AGCGGUGCC------CGGCG---UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 56135 0.67 0.342349
Target:  5'- aGGGCggggGgCGCGGGCCgaggguggcgGCAGCgGCGg -3'
miRNA:   3'- gCCCGag--CgGUGCCCGG----------CGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 70997 0.67 0.342349
Target:  5'- gCGGGCg-GCCGCcaGGCCaGCucGCCGCGc -3'
miRNA:   3'- -GCCCGagCGGUGc-CCGG-CGu-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 5411 0.67 0.347437
Target:  5'- gCGGGCgccgCGaacgaaggagacgaCCGC-GGCCGCGGCgGCGg -3'
miRNA:   3'- -GCCCGa---GC--------------GGUGcCCGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 39465 0.67 0.349634
Target:  5'- gCGGcGCggCGCCccaACGGGCC-C-GCCGCGg -3'
miRNA:   3'- -GCC-CGa-GCGG---UGCCCGGcGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 133805 0.67 0.349634
Target:  5'- cCGGGCUgcucgacgGCgACGaGGCgcugCGCGGCCGCGu -3'
miRNA:   3'- -GCCCGAg-------CGgUGC-CCG----GCGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 45624 0.67 0.357029
Target:  5'- gCGGcGCggCGCgGCGGGcCCGC-GCCGgAg -3'
miRNA:   3'- -GCC-CGa-GCGgUGCCC-GGCGuCGGCgU- -5'
23567 5' -66.4 NC_005261.1 + 57611 0.67 0.363778
Target:  5'- gCGGcGCaCGCCGCGcagcccuccggguGGCUcaGCAGCCGCc -3'
miRNA:   3'- -GCC-CGaGCGGUGC-------------CCGG--CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 131866 0.67 0.364534
Target:  5'- gCGGcuGCUUGagCugGcGGCCGCcGCCGCAc -3'
miRNA:   3'- -GCC--CGAGCg-GugC-CCGGCGuCGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.