miRNA display CGI


Results 161 - 180 of 919 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23567 5' -66.4 NC_005261.1 + 612 0.67 0.342349
Target:  5'- aGGGCgagUGCCcgacgcaggggAUGuGGCgGCGGCCGCc -3'
miRNA:   3'- gCCCGa--GCGG-----------UGC-CCGgCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 53012 0.67 0.342349
Target:  5'- uCGGcgcaGCUCGCCagcgcuuccGCGGcGCCgggGCAGCCGUc -3'
miRNA:   3'- -GCC----CGAGCGG---------UGCC-CGG---CGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 70997 0.67 0.342349
Target:  5'- gCGGGCg-GCCGCcaGGCCaGCucGCCGCGc -3'
miRNA:   3'- -GCCCGagCGGUGc-CCGG-CGu-CGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 3576 0.67 0.346707
Target:  5'- aGGcGCgcgcgcuccaccgCGUCGCGGGCCGC-GCCaaGCAg -3'
miRNA:   3'- gCC-CGa------------GCGGUGCCCGGCGuCGG--CGU- -5'
23567 5' -66.4 NC_005261.1 + 4830 0.67 0.349634
Target:  5'- uGGGCgcagGCgGCGGcGuCCGC-GCCGCAg -3'
miRNA:   3'- gCCCGag--CGgUGCC-C-GGCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 104126 0.67 0.349634
Target:  5'- nGcGGUUCGCCGCGaGCU-CGGCCGCc -3'
miRNA:   3'- gC-CCGAGCGGUGCcCGGcGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 23455 0.67 0.357029
Target:  5'- aGGGCagaaggCGCCA-GGcCCGCGGCgGCGa -3'
miRNA:   3'- gCCCGa-----GCGGUgCCcGGCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 97526 0.67 0.357029
Target:  5'- -cGGCUCGCCGCGaucggcGGCCcCGGCgGUg -3'
miRNA:   3'- gcCCGAGCGGUGC------CCGGcGUCGgCGu -5'
23567 5' -66.4 NC_005261.1 + 20644 0.67 0.364534
Target:  5'- -cGGUUCGCCGCccgcaccgccgGuGGCgGCAGCgGCAg -3'
miRNA:   3'- gcCCGAGCGGUG-----------C-CCGgCGUCGgCGU- -5'
23567 5' -66.4 NC_005261.1 + 68172 0.68 0.335174
Target:  5'- gCGGaGCUcgcgcgCGCCGCGGGCCcccucGCccccGCCGCc -3'
miRNA:   3'- -GCC-CGA------GCGGUGCCCGG-----CGu---CGGCGu -5'
23567 5' -66.4 NC_005261.1 + 12729 0.68 0.335174
Target:  5'- gCGGGCcCGCCggcccccuggGCGGGCCcgGCgaGGUCGUAg -3'
miRNA:   3'- -GCCCGaGCGG----------UGCCCGG--CG--UCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 83039 0.66 0.436809
Target:  5'- aGGGCcgcUCGCCGCGGGagggggcuccCUGCGcgcccCCGCGg -3'
miRNA:   3'- gCCCG---AGCGGUGCCC----------GGCGUc----GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 78215 0.66 0.436809
Target:  5'- cCGuGGCUggccUGCCGCucGCUcaGCAGCCGCAg -3'
miRNA:   3'- -GC-CCGA----GCGGUGccCGG--CGUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 106223 0.66 0.436809
Target:  5'- cCGcGGC-CGCCugGcGCgGCcGCCGCGc -3'
miRNA:   3'- -GC-CCGaGCGGugCcCGgCGuCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 23490 0.68 0.314313
Target:  5'- gCGGGCcCGCCugggcaggcGCGGGCCcugGgAGCaCGCGg -3'
miRNA:   3'- -GCCCGaGCGG---------UGCCCGG---CgUCG-GCGU- -5'
23567 5' -66.4 NC_005261.1 + 74560 0.68 0.314313
Target:  5'- uGGGCguggacauCCACGcGGUCGCGGaCCGCGu -3'
miRNA:   3'- gCCCGagc-----GGUGC-CCGGCGUC-GGCGU- -5'
23567 5' -66.4 NC_005261.1 + 67826 0.68 0.320466
Target:  5'- uCGGGCgcgCGCaggaGGGCCGCacucuccgggccgAGCUGCu -3'
miRNA:   3'- -GCCCGa--GCGgug-CCCGGCG-------------UCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 24904 0.68 0.321155
Target:  5'- gCGGGCgccccuucaaGCCcuCGgcGGCUGCAGCCGCc -3'
miRNA:   3'- -GCCCGag--------CGGu-GC--CCGGCGUCGGCGu -5'
23567 5' -66.4 NC_005261.1 + 59926 0.68 0.32811
Target:  5'- aCGaGCUCGCCGucGGCCaucucCAGCCGCAg -3'
miRNA:   3'- -GCcCGAGCGGUgcCCGGc----GUCGGCGU- -5'
23567 5' -66.4 NC_005261.1 + 68760 0.68 0.32811
Target:  5'- cCGGGg-CGCCGCGGaGCCGCcguGUCGa- -3'
miRNA:   3'- -GCCCgaGCGGUGCC-CGGCGu--CGGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.