miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 135655 0.66 0.919191
Target:  5'- gCGCGgGCGcGGGCGgcccucgcuCGAGGAGC-UCu -3'
miRNA:   3'- -GCGCaUGCaCCCGC---------GCUUCUCGuAGu -5'
23568 3' -55.6 NC_005261.1 + 10028 0.66 0.919191
Target:  5'- aGCgGUGCGgGGGCGgGGuuGAGCAa-- -3'
miRNA:   3'- gCG-CAUGCaCCCGCgCUu-CUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 115982 0.66 0.919191
Target:  5'- aGCGga-GcGGGCGCGgAGGGGCGgggCGg -3'
miRNA:   3'- gCGCaugCaCCCGCGC-UUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 661 0.66 0.919191
Target:  5'- gCGCGcuuaggugGCG-GGGCGCGAGGcuaggguuGGCAcCAa -3'
miRNA:   3'- -GCGCa-------UGCaCCCGCGCUUC--------UCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 97751 0.66 0.919191
Target:  5'- gGCGggGCGggcucgGcGGCGCGGccGGCAUCGa -3'
miRNA:   3'- gCGCa-UGCa-----C-CCGCGCUucUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 11465 0.66 0.919191
Target:  5'- aGCGga-GcGGGCGCGgAGGGGCGgggCGg -3'
miRNA:   3'- gCGCaugCaCCCGCGC-UUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 25625 0.66 0.919191
Target:  5'- uGCGagGCGcGGuCGuCGAAGAGCGUCc -3'
miRNA:   3'- gCGCa-UGCaCCcGC-GCUUCUCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 21696 0.66 0.913373
Target:  5'- aCGC--GCGcGGGCGCGGAGcGGCGg-- -3'
miRNA:   3'- -GCGcaUGCaCCCGCGCUUC-UCGUagu -5'
23568 3' -55.6 NC_005261.1 + 123091 0.66 0.913373
Target:  5'- cCGCGgACGgcGGGgGCGAAgGAGUcgCGa -3'
miRNA:   3'- -GCGCaUGCa-CCCgCGCUU-CUCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 33379 0.66 0.913373
Target:  5'- aCGCGUGCGUGacccGCGCGGuccGCGUg- -3'
miRNA:   3'- -GCGCAUGCACc---CGCGCUucuCGUAgu -5'
23568 3' -55.6 NC_005261.1 + 112671 0.66 0.913373
Target:  5'- aGCG-GC-UGGaGCGCGAGGGGCugggcGUCGa -3'
miRNA:   3'- gCGCaUGcACC-CGCGCUUCUCG-----UAGU- -5'
23568 3' -55.6 NC_005261.1 + 32260 0.66 0.912778
Target:  5'- gGCGUcgacgccGCGcUGGGCGCcGAGGcCAUCGa -3'
miRNA:   3'- gCGCA-------UGC-ACCCGCGcUUCUcGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 133854 0.66 0.907316
Target:  5'- cCGCGUGCGcuucgGcGGCGCGGgcgacacucgcgAGGGCcUCu -3'
miRNA:   3'- -GCGCAUGCa----C-CCGCGCU------------UCUCGuAGu -5'
23568 3' -55.6 NC_005261.1 + 55684 0.66 0.907316
Target:  5'- gCGCGgcCGcGGGCGaggaGggGGGCGa-- -3'
miRNA:   3'- -GCGCauGCaCCCGCg---CuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 80865 0.66 0.907316
Target:  5'- gGCGgGCGUcGGGCcgcGCGggGAG-GUCGu -3'
miRNA:   3'- gCGCaUGCA-CCCG---CGCuuCUCgUAGU- -5'
23568 3' -55.6 NC_005261.1 + 99218 0.66 0.907316
Target:  5'- uCGCGgacgcucugcGCGUGGGCGCGcu-GGCA-CAg -3'
miRNA:   3'- -GCGCa---------UGCACCCGCGCuucUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 48795 0.66 0.907316
Target:  5'- aGC--ACGgcGGGCGCGggGAGCc--- -3'
miRNA:   3'- gCGcaUGCa-CCCGCGCuuCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 29337 0.66 0.907316
Target:  5'- cCGCGUGCGcuucgGcGGCGCGGgcgacacucgcgAGGGCcUCu -3'
miRNA:   3'- -GCGCAUGCa----C-CCGCGCU------------UCUCGuAGu -5'
23568 3' -55.6 NC_005261.1 + 8928 0.66 0.907316
Target:  5'- aGCGcagGCGcgGGGCGCcGGGGGCGg-- -3'
miRNA:   3'- gCGCa--UGCa-CCCGCGcUUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 15530 0.66 0.901019
Target:  5'- gCGCGgcCG-GcGGCGCGGcgauGGAGCAggcgCAg -3'
miRNA:   3'- -GCGCauGCaC-CCGCGCU----UCUCGUa---GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.