Results 1 - 20 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23568 | 3' | -55.6 | NC_005261.1 | + | 135655 | 0.66 | 0.919191 |
Target: 5'- gCGCGgGCGcGGGCGgcccucgcuCGAGGAGC-UCu -3' miRNA: 3'- -GCGCaUGCaCCCGC---------GCUUCUCGuAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 108182 | 0.67 | 0.880729 |
Target: 5'- gCGCGgccGCGgcuccGGGCGCG-AGAGCu--- -3' miRNA: 3'- -GCGCa--UGCa----CCCGCGCuUCUCGuagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 32914 | 0.67 | 0.880729 |
Target: 5'- gGCGcGCGUgGGGgGCGgcGGGCGg-- -3' miRNA: 3'- gCGCaUGCA-CCCgCGCuuCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 122653 | 1.08 | 0.003189 |
Target: 5'- gCGCGUACGUGGGCGCGAAGAGCAUCAc -3' miRNA: 3'- -GCGCAUGCACCCGCGCUUCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 29337 | 0.66 | 0.907316 |
Target: 5'- cCGCGUGCGcuucgGcGGCGCGGgcgacacucgcgAGGGCcUCu -3' miRNA: 3'- -GCGCAUGCa----C-CCGCGCU------------UCUCGuAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 31581 | 0.66 | 0.901019 |
Target: 5'- gCGCGccggACGUGagcgcgcucGGCGCGcAGGGCGUg- -3' miRNA: 3'- -GCGCa---UGCAC---------CCGCGCuUCUCGUAgu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 67665 | 0.66 | 0.894487 |
Target: 5'- cCGCGcGCGgcgccaGGCGCGguGAGCgcGUCAa -3' miRNA: 3'- -GCGCaUGCac----CCGCGCuuCUCG--UAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 108908 | 0.66 | 0.894487 |
Target: 5'- gGCGaGCG-GGGCGCGggGucggggcccAGCAc-- -3' miRNA: 3'- gCGCaUGCaCCCGCGCuuC---------UCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 87620 | 0.66 | 0.890456 |
Target: 5'- cCGCG-ACGuUGGGCGCGAAcgccgccuccacgguGAGCccgCGc -3' miRNA: 3'- -GCGCaUGC-ACCCGCGCUU---------------CUCGua-GU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 46031 | 0.66 | 0.887722 |
Target: 5'- aGCaggACGgGGGCGCGGuAGAGgGUCc -3' miRNA: 3'- gCGca-UGCaCCCGCGCU-UCUCgUAGu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 127756 | 0.66 | 0.887722 |
Target: 5'- aGCGggccGCGgcGGGCGCGAAGAcGCc--- -3' miRNA: 3'- gCGCa---UGCa-CCCGCGCUUCU-CGuagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 15030 | 0.66 | 0.894487 |
Target: 5'- gCGgGUGCcggGGGCguaGCGggGGGgGUCGg -3' miRNA: 3'- -GCgCAUGca-CCCG---CGCuuCUCgUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 97751 | 0.66 | 0.919191 |
Target: 5'- gGCGggGCGggcucgGcGGCGCGGccGGCAUCGa -3' miRNA: 3'- gCGCa-UGCa-----C-CCGCGCUucUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 63567 | 0.66 | 0.887722 |
Target: 5'- gCGCGgcCGgcaugaUGGGCcCGAAGAGCGgcgCGg -3' miRNA: 3'- -GCGCauGC------ACCCGcGCUUCUCGUa--GU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 11465 | 0.66 | 0.919191 |
Target: 5'- aGCGga-GcGGGCGCGgAGGGGCGgggCGg -3' miRNA: 3'- gCGCaugCaCCCGCGC-UUCUCGUa--GU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 59059 | 0.66 | 0.894487 |
Target: 5'- aGCGcGCGcGGcCGCGGAGAGCGc-- -3' miRNA: 3'- gCGCaUGCaCCcGCGCUUCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 1022 | 0.66 | 0.887722 |
Target: 5'- gGCGg--GUGGGCuuuuGCGGAGGGCGg-- -3' miRNA: 3'- gCGCaugCACCCG----CGCUUCUCGUagu -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 86094 | 0.67 | 0.880729 |
Target: 5'- gCGCGUucuCGUcGGCGCcc-GGGCGUCGg -3' miRNA: 3'- -GCGCAu--GCAcCCGCGcuuCUCGUAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 112671 | 0.66 | 0.913373 |
Target: 5'- aGCG-GC-UGGaGCGCGAGGGGCugggcGUCGa -3' miRNA: 3'- gCGCaUGcACC-CGCGCUUCUCG-----UAGU- -5' |
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23568 | 3' | -55.6 | NC_005261.1 | + | 39997 | 0.66 | 0.901019 |
Target: 5'- gGCGUGCGUGaaGGCGUac-GAGCAg-- -3' miRNA: 3'- gCGCAUGCAC--CCGCGcuuCUCGUagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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