miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 3' -55.6 NC_005261.1 + 32914 0.67 0.880729
Target:  5'- gGCGcGCGUgGGGgGCGgcGGGCGg-- -3'
miRNA:   3'- gCGCaUGCA-CCCgCGCuuCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 86094 0.67 0.880729
Target:  5'- gCGCGUucuCGUcGGCGCcc-GGGCGUCGg -3'
miRNA:   3'- -GCGCAu--GCAcCCGCGcuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 45653 0.67 0.880729
Target:  5'- uGCGcucgcGCGUGGGCGCGcGGcGCG-CGg -3'
miRNA:   3'- gCGCa----UGCACCCGCGCuUCuCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 56403 0.67 0.880729
Target:  5'- uCGCauccGCGcGGGCGCG--GGGCGUCAc -3'
miRNA:   3'- -GCGca--UGCaCCCGCGCuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 108182 0.67 0.880729
Target:  5'- gCGCGgccGCGgcuccGGGCGCG-AGAGCu--- -3'
miRNA:   3'- -GCGCa--UGCa----CCCGCGCuUCUCGuagu -5'
23568 3' -55.6 NC_005261.1 + 116481 0.67 0.880017
Target:  5'- gCGCGgGCGgggcGGGCGCGcgguauaAAGAGCGc-- -3'
miRNA:   3'- -GCGCaUGCa---CCCGCGC-------UUCUCGUagu -5'
23568 3' -55.6 NC_005261.1 + 98358 0.67 0.880017
Target:  5'- gGCGgGgGUGGGCGCGGGcucuggcGGGCG-CAa -3'
miRNA:   3'- gCGCaUgCACCCGCGCUU-------CUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 98717 0.67 0.873511
Target:  5'- gGCGcGCGgcccGGGCcucuucggGCGAGGGGCgAUCAu -3'
miRNA:   3'- gCGCaUGCa---CCCG--------CGCUUCUCG-UAGU- -5'
23568 3' -55.6 NC_005261.1 + 98375 0.67 0.873511
Target:  5'- cCGUGUGCcUGGGCGCccGgcGGGaCAUCc -3'
miRNA:   3'- -GCGCAUGcACCCGCG--CuuCUC-GUAGu -5'
23568 3' -55.6 NC_005261.1 + 71983 0.67 0.873511
Target:  5'- gGCGUGC-UGGuGaCGaCGgcGGGCAUCAa -3'
miRNA:   3'- gCGCAUGcACC-C-GC-GCuuCUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 25279 0.67 0.873511
Target:  5'- cCGCG-AgG-GGGCGCGGucuguggccguGAGCGUCGu -3'
miRNA:   3'- -GCGCaUgCaCCCGCGCUu----------CUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 49449 0.67 0.873511
Target:  5'- gCGCGgcgccgGCGgccaGGGC-CGAGGAGCG-CAg -3'
miRNA:   3'- -GCGCa-----UGCa---CCCGcGCUUCUCGUaGU- -5'
23568 3' -55.6 NC_005261.1 + 129796 0.67 0.873511
Target:  5'- cCGCG-AgG-GGGCGCGGucuguggccguGAGCGUCGu -3'
miRNA:   3'- -GCGCaUgCaCCCGCGCUu----------CUCGUAGU- -5'
23568 3' -55.6 NC_005261.1 + 74481 0.67 0.871302
Target:  5'- gGCGUGCcUGGGCGgGAucucggcgcucuucGGGGCggCGc -3'
miRNA:   3'- gCGCAUGcACCCGCgCU--------------UCUCGuaGU- -5'
23568 3' -55.6 NC_005261.1 + 58294 0.67 0.866074
Target:  5'- gCGCGc-CGggGGGCGCGggGAGgGg-- -3'
miRNA:   3'- -GCGCauGCa-CCCGCGCuuCUCgUagu -5'
23568 3' -55.6 NC_005261.1 + 21285 0.67 0.866074
Target:  5'- cCGCGUcuUGUuGGCGCGGAaGGCGUCc -3'
miRNA:   3'- -GCGCAu-GCAcCCGCGCUUcUCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 28113 0.67 0.866074
Target:  5'- uGCGUcaGCGUcaggacGGGCGCGccGGGGCGcUCGa -3'
miRNA:   3'- gCGCA--UGCA------CCCGCGCu-UCUCGU-AGU- -5'
23568 3' -55.6 NC_005261.1 + 7557 0.67 0.866074
Target:  5'- aCGCGcGCGggcagGGGCucgcCGAGGAGCAgcgCGu -3'
miRNA:   3'- -GCGCaUGCa----CCCGc---GCUUCUCGUa--GU- -5'
23568 3' -55.6 NC_005261.1 + 18728 0.67 0.863801
Target:  5'- cCGCGUGCuGUuggcGGGCgGCGGcgccggcguccccaAGGGCGUCu -3'
miRNA:   3'- -GCGCAUG-CA----CCCG-CGCU--------------UCUCGUAGu -5'
23568 3' -55.6 NC_005261.1 + 110511 0.67 0.863801
Target:  5'- aGCGUcacggccgucgucuGCG-GGGCGCaGGAGGGCGc-- -3'
miRNA:   3'- gCGCA--------------UGCaCCCGCG-CUUCUCGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.