miRNA display CGI


Results 41 - 60 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 71120 0.66 0.629673
Target:  5'- aGCuUGCGCCcGCgcgCCAcgaCGCUcucaaGCGCCGc -3'
miRNA:   3'- -CG-ACGCGGaCGa--GGUa--GCGG-----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 117515 0.66 0.599025
Target:  5'- --gGCGCC-GCcacgaugagcgugUCCAcCGCgGCGCCGg -3'
miRNA:   3'- cgaCGCGGaCG-------------AGGUaGCGgCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 91125 0.66 0.580335
Target:  5'- cGC-GCGCCgcgGCcgaggCCucaGCCGUGCCGc -3'
miRNA:   3'- -CGaCGCGGa--CGa----GGuagCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 4912 0.66 0.586226
Target:  5'- gGCgGCGgCUGcCUCCGccgcggccgcgagCGcCCGCGCCGc -3'
miRNA:   3'- -CGaCGCgGAC-GAGGUa------------GC-GGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 134031 0.66 0.600011
Target:  5'- cGCcGCGCUcGCggCCAUgGCCG-GCCa -3'
miRNA:   3'- -CGaCGCGGaCGa-GGUAgCGGCgCGGc -5'
23568 5' -62.2 NC_005261.1 + 134288 0.66 0.619775
Target:  5'- uCUGgGCgUgGgUCCAcgucgccgccuUCGCCGCGCUGg -3'
miRNA:   3'- cGACgCGgA-CgAGGU-----------AGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 84659 0.66 0.629673
Target:  5'- gGCUgGCGCCgcccGCgCCcgCgGCCGCGCa- -3'
miRNA:   3'- -CGA-CGCGGa---CGaGGuaG-CGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 118396 0.66 0.629673
Target:  5'- cGCUgGCgGCCgcggGCgCCGcaGCCGCGCUGg -3'
miRNA:   3'- -CGA-CG-CGGa---CGaGGUagCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 76431 0.66 0.619775
Target:  5'- --aGCGCCgGCgCCAUgGCggaCGCGCCc -3'
miRNA:   3'- cgaCGCGGaCGaGGUAgCG---GCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 104584 0.66 0.609885
Target:  5'- gGCUGCGCgCgcaucGcCUCCGccaGCCGCGCg- -3'
miRNA:   3'- -CGACGCG-Ga----C-GAGGUag-CGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 132449 0.66 0.609885
Target:  5'- --aGCGCgUGC-CCcUCGgccgcccuCCGCGCCGg -3'
miRNA:   3'- cgaCGCGgACGaGGuAGC--------GGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 82579 0.66 0.619775
Target:  5'- aGCUcGCGCagcGCgUCC-UCGuuGCGCUGg -3'
miRNA:   3'- -CGA-CGCGga-CG-AGGuAGCggCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 72471 0.66 0.619775
Target:  5'- gGCgaGCGCgaGCgcggCCAgCGCCaggaGCGCCGc -3'
miRNA:   3'- -CGa-CGCGgaCGa---GGUaGCGG----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 72944 0.66 0.590159
Target:  5'- aGCgccgGCGCCgGCaCCGgcucgCGCC-CGCCGc -3'
miRNA:   3'- -CGa---CGCGGaCGaGGUa----GCGGcGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 121817 0.66 0.590159
Target:  5'- gGCUGgGCuCUGCgggCCGcCGCgGCGgCGc -3'
miRNA:   3'- -CGACgCG-GACGa--GGUaGCGgCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 3430 0.66 0.600997
Target:  5'- cGC-GgGCCaGCgUCCAggcgggcgcgcgggcCGCCGCGCCGc -3'
miRNA:   3'- -CGaCgCGGaCG-AGGUa--------------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 106796 0.66 0.589175
Target:  5'- uCUGCGCCcGCaCCAgCGCCGaguggccCGCCa -3'
miRNA:   3'- cGACGCGGaCGaGGUaGCGGC-------GCGGc -5'
23568 5' -62.2 NC_005261.1 + 122688 1.09 0.000694
Target:  5'- aGCUGCGCCUGCUCCAUCGCCGCGCCGc -3'
miRNA:   3'- -CGACGCGGACGAGGUAGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 31284 0.66 0.580335
Target:  5'- cGCUG-GCCgagaucgcgGC-CCGcCGCCGCGCgGg -3'
miRNA:   3'- -CGACgCGGa--------CGaGGUaGCGGCGCGgC- -5'
23568 5' -62.2 NC_005261.1 + 30184 0.66 0.590159
Target:  5'- nGC-GCGCCgagGCggc--CGCCGCGCUGg -3'
miRNA:   3'- -CGaCGCGGa--CGagguaGCGGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.