miRNA display CGI


Results 61 - 80 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 1523 0.73 0.238864
Target:  5'- --gGCGCCaGCUCCAgcgcgCGCCGC-CCGc -3'
miRNA:   3'- cgaCGCGGaCGAGGUa----GCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 77010 0.73 0.233328
Target:  5'- cGC-GCGCCgccCUCC-UCGCCGaCGCCGa -3'
miRNA:   3'- -CGaCGCGGac-GAGGuAGCGGC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 91695 0.73 0.237192
Target:  5'- cGC-GCGCCUGCgacagCCGgcugcaaggccggcUCGCCGCGgCGg -3'
miRNA:   3'- -CGaCGCGGACGa----GGU--------------AGCGGCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 46976 0.73 0.238864
Target:  5'- cGCUGcCGCC-GCccgCCGgcagcgcgCGCCGCGCCGc -3'
miRNA:   3'- -CGAC-GCGGaCGa--GGUa-------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 29843 0.73 0.250267
Target:  5'- aGCUgcGCGCCgUGCUcgCCGgccgCGCgGCGCCGg -3'
miRNA:   3'- -CGA--CGCGG-ACGA--GGUa---GCGgCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 102821 0.72 0.274415
Target:  5'- cGC-GCGCCggucUGCgCCucgCGCCGCGCCa -3'
miRNA:   3'- -CGaCGCGG----ACGaGGua-GCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 1167 0.72 0.287173
Target:  5'- cGC-GCGCCgGC-CCG-CGCCGCgGCCGg -3'
miRNA:   3'- -CGaCGCGGaCGaGGUaGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 87457 0.72 0.287173
Target:  5'- cGCcGCGCCUGCUCgCAg-GCgCGCGUCa -3'
miRNA:   3'- -CGaCGCGGACGAG-GUagCG-GCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 52680 0.72 0.287173
Target:  5'- aGCggGC-CCUGCUCgCGggcgCGCCGCuGCCGg -3'
miRNA:   3'- -CGa-CGcGGACGAG-GUa---GCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 106486 0.72 0.307178
Target:  5'- -gUGCGCCUGC-CCGaCgGCCGgGCCa -3'
miRNA:   3'- cgACGCGGACGaGGUaG-CGGCgCGGc -5'
23568 5' -62.2 NC_005261.1 + 75771 0.72 0.268208
Target:  5'- cGgUGUGCCUGCUUC--CGCCGCuGCUGg -3'
miRNA:   3'- -CgACGCGGACGAGGuaGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 124342 0.72 0.287173
Target:  5'- aGCaGCGCCUcaguggGCggCAUUGCUGCGCCGu -3'
miRNA:   3'- -CGaCGCGGA------CGagGUAGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 103878 0.72 0.300393
Target:  5'- cGCgGCGCCcgGCcCCGUCgGCCGCcCCGg -3'
miRNA:   3'- -CGaCGCGGa-CGaGGUAG-CGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 131777 0.72 0.280736
Target:  5'- gGC-GCGCCgcuggGCcCCGaCGCCGCGCCc -3'
miRNA:   3'- -CGaCGCGGa----CGaGGUaGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 33725 0.72 0.287173
Target:  5'- gGCgguggGgGCCUGCcCCucgCGCgGCGCCGg -3'
miRNA:   3'- -CGa----CgCGGACGaGGua-GCGgCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 102252 0.72 0.27693
Target:  5'- cGCUGCGCgCUcGcCUCCAgcgcccggucggccUGCCGCGCCa -3'
miRNA:   3'- -CGACGCG-GA-C-GAGGUa-------------GCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 29090 0.72 0.293725
Target:  5'- uGCUgugGCGCCUGC-CUGggGCCGCGCaCGa -3'
miRNA:   3'- -CGA---CGCGGACGaGGUagCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 105685 0.72 0.287173
Target:  5'- cGC-GCGCCgGC-CCG-CGCCGCgGCCGg -3'
miRNA:   3'- -CGaCGCGGaCGaGGUaGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 61743 0.72 0.280736
Target:  5'- cGCgaGCGCCgaggGCUCgGgguccgCGCgCGCGCCGg -3'
miRNA:   3'- -CGa-CGCGGa---CGAGgUa-----GCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 91510 0.72 0.274415
Target:  5'- --cGCGCCgGCguacgaggCCGUCGUCGCGCUa -3'
miRNA:   3'- cgaCGCGGaCGa-------GGUAGCGGCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.