miRNA display CGI


Results 61 - 80 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 82733 0.73 0.250267
Target:  5'- --aGUGgCUGCUCCAgagcgCGCCGCGCg- -3'
miRNA:   3'- cgaCGCgGACGAGGUa----GCGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 6450 0.71 0.321097
Target:  5'- cGCgGCGUCgggGC-CCAgcggcgcgccCGCCGCGCCGg -3'
miRNA:   3'- -CGaCGCGGa--CGaGGUa---------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 19290 0.71 0.314079
Target:  5'- -gUGCGCCgcgGCcagCCGcgcggCGCCGCGCCc -3'
miRNA:   3'- cgACGCGGa--CGa--GGUa----GCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 63747 0.71 0.314079
Target:  5'- --aGCGCCgagaucccGC-CCAggcaCGCCGCGCCGg -3'
miRNA:   3'- cgaCGCGGa-------CGaGGUa---GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 42147 0.71 0.311996
Target:  5'- gGUUGCGCCgggccgcacucaccUGCUCgGgCGUCGUGCCGu -3'
miRNA:   3'- -CGACGCGG--------------ACGAGgUaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 106486 0.72 0.307178
Target:  5'- -gUGCGCCUGC-CCGaCgGCCGgGCCa -3'
miRNA:   3'- cgACGCGGACGaGGUaG-CGGCgCGGc -5'
23568 5' -62.2 NC_005261.1 + 103878 0.72 0.300393
Target:  5'- cGCgGCGCCcgGCcCCGUCgGCCGCcCCGg -3'
miRNA:   3'- -CGaCGCGGa-CGaGGUAG-CGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 29090 0.72 0.293725
Target:  5'- uGCUgugGCGCCUGC-CUGggGCCGCGCaCGa -3'
miRNA:   3'- -CGA---CGCGGACGaGGUagCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 105685 0.72 0.287173
Target:  5'- cGC-GCGCCgGC-CCG-CGCCGCgGCCGg -3'
miRNA:   3'- -CGaCGCGGaCGaGGUaGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 35777 0.72 0.287173
Target:  5'- --gGCGCCUGCgcgccgaggCCGggCGgCGCGCCGa -3'
miRNA:   3'- cgaCGCGGACGa--------GGUa-GCgGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 31080 0.72 0.287173
Target:  5'- cGCUG-GCC-GcCUCCAUgGCCGCgGCCGu -3'
miRNA:   3'- -CGACgCGGaC-GAGGUAgCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 61743 0.72 0.280736
Target:  5'- cGCgaGCGCCgaggGCUCgGgguccgCGCgCGCGCCGg -3'
miRNA:   3'- -CGa-CGCGGa---CGAGgUa-----GCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 91510 0.72 0.274415
Target:  5'- --cGCGCCgGCguacgaggCCGUCGUCGCGCUa -3'
miRNA:   3'- cgaCGCGGaCGa-------GGUAGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 40032 0.72 0.268208
Target:  5'- gGCgGCGCCcGCUgCC--CGCCGCGCCc -3'
miRNA:   3'- -CGaCGCGGaCGA-GGuaGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 75771 0.72 0.268208
Target:  5'- cGgUGUGCCUGCUUC--CGCCGCuGCUGg -3'
miRNA:   3'- -CgACGCGGACGAGGuaGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 84765 0.73 0.262115
Target:  5'- uGC-GCGCCUGCUgCGUC-CCGC-CCGg -3'
miRNA:   3'- -CGaCGCGGACGAgGUAGcGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 97176 0.73 0.250267
Target:  5'- --cGCGCCgccgGCUCUGagGCCGgCGCCGg -3'
miRNA:   3'- cgaCGCGGa---CGAGGUagCGGC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 91414 0.73 0.250267
Target:  5'- cGC-GCGCCUGgCgcgcgCCAUcCGCgCGCGCCGc -3'
miRNA:   3'- -CGaCGCGGAC-Ga----GGUA-GCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 134360 0.73 0.250267
Target:  5'- aGCUgcGCGCCgUGCUcgCCGgccgCGCgGCGCCGg -3'
miRNA:   3'- -CGA--CGCGG-ACGA--GGUa---GCGgCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 78801 0.73 0.244511
Target:  5'- uGCcgGCGCCUGCcgggCCGcgcgacagCGCCGgCGCCGg -3'
miRNA:   3'- -CGa-CGCGGACGa---GGUa-------GCGGC-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.