miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 17178 0.66 0.441783
Target:  5'- aCACCGCGcGCCacaaccgcgacgugUGGcGGCGCUUcucccgcGCCAGc -3'
miRNA:   3'- -GUGGCGC-CGG--------------ACCcCCGCGAA-------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 20180 0.68 0.332427
Target:  5'- uGCCGCGGCCgccaGcGcGGGCGUcgcgGCCGGg -3'
miRNA:   3'- gUGGCGCCGGa---C-C-CCCGCGaa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 20272 0.66 0.419319
Target:  5'- aACCGCcgGGUCgugucgcgGGGGcGCGCUUGCg-- -3'
miRNA:   3'- gUGGCG--CCGGa-------CCCC-CGCGAACGguu -5'
23569 3' -64.7 NC_005261.1 + 21023 0.7 0.259503
Target:  5'- aCACCGagcCCUGGGGGCGCgcaccgugcGCCAu -3'
miRNA:   3'- -GUGGCgccGGACCCCCGCGaa-------CGGUu -5'
23569 3' -64.7 NC_005261.1 + 22369 0.66 0.46311
Target:  5'- uGCCggGCGcGCCUcggcGGGGGCcGCgcggGCCAAc -3'
miRNA:   3'- gUGG--CGC-CGGA----CCCCCG-CGaa--CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 22660 0.69 0.297537
Target:  5'- gGCgGC-GCCUGGGcGGCGCccgagUGCCGc -3'
miRNA:   3'- gUGgCGcCGGACCC-CCGCGa----ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 22756 0.67 0.378134
Target:  5'- gGCgGCGGCCcacgcgucUGGGGGCGg--GCCc- -3'
miRNA:   3'- gUGgCGCCGG--------ACCCCCGCgaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 22802 0.68 0.31812
Target:  5'- -gUCGCGGCCgGcGGcGGCGC-UGCCGc -3'
miRNA:   3'- guGGCGCCGGaC-CC-CCGCGaACGGUu -5'
23569 3' -64.7 NC_005261.1 + 23026 0.66 0.427877
Target:  5'- gCGCCGCGGaCgcacGGGCGCUggGCCGu -3'
miRNA:   3'- -GUGGCGCCgGacc-CCCGCGAa-CGGUu -5'
23569 3' -64.7 NC_005261.1 + 23795 0.7 0.252976
Target:  5'- uCGCCGgGGCaggccggCUGGGGcGgGCUUGCCc- -3'
miRNA:   3'- -GUGGCgCCG-------GACCCC-CgCGAACGGuu -5'
23569 3' -64.7 NC_005261.1 + 23852 0.7 0.252976
Target:  5'- uCGCCGgGGCaggccggCUGGGGcGgGCUUGCCc- -3'
miRNA:   3'- -GUGGCgCCG-------GACCCC-CgCGAACGGuu -5'
23569 3' -64.7 NC_005261.1 + 28059 0.69 0.304281
Target:  5'- aACUGCcGCCcgGGGGGCGCgguggcggcgGCCAu -3'
miRNA:   3'- gUGGCGcCGGa-CCCCCGCGaa--------CGGUu -5'
23569 3' -64.7 NC_005261.1 + 28253 0.71 0.205037
Target:  5'- aGCgGgGGCUgcucggGGGGGCGCUguUGCCGc -3'
miRNA:   3'- gUGgCgCCGGa-----CCCCCGCGA--ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 28480 0.66 0.435667
Target:  5'- aCGCgGCGGCC-GGGagccgcauucgcaGGUGgUUGCCGAu -3'
miRNA:   3'- -GUGgCGCCGGaCCC-------------CCGCgAACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 28758 0.83 0.028395
Target:  5'- aCGCCGCGGCC-GGGGGCGCcuggGCCGc -3'
miRNA:   3'- -GUGGCGCCGGaCCCCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 29078 0.67 0.378134
Target:  5'- uGCC-CGGCCUGGugcuguGGCGCcUGCCu- -3'
miRNA:   3'- gUGGcGCCGGACCc-----CCGCGaACGGuu -5'
23569 3' -64.7 NC_005261.1 + 29944 0.68 0.335345
Target:  5'- gCGCUGCGGCCUGccgcgaggcgcuagaGGcGGCGCggugcGCCGc -3'
miRNA:   3'- -GUGGCGCCGGAC---------------CC-CCGCGaa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 30042 0.66 0.427877
Target:  5'- gGCCGCGGCCUGccGGcCGCg-GCCu- -3'
miRNA:   3'- gUGGCGCCGGACccCC-GCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 30335 0.66 0.465814
Target:  5'- gGCCGCGGCCgcGGacaagcgggccgcGGGCGCgagcgcgcgggcgGCCGg -3'
miRNA:   3'- gUGGCGCCGGa-CC-------------CCCGCGaa-----------CGGUu -5'
23569 3' -64.7 NC_005261.1 + 30727 0.66 0.445299
Target:  5'- uCGgCGCGGCCUGcGuGGCGCagcugcUGCCGc -3'
miRNA:   3'- -GUgGCGCCGGACcC-CCGCGa-----ACGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.