Results 41 - 60 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23569 | 3' | -64.7 | NC_005261.1 | + | 48327 | 0.66 | 0.427877 |
Target: 5'- -nCCG-GGCUcGGGGGCGCgcgcggcgagGCCGAg -3' miRNA: 3'- guGGCgCCGGaCCCCCGCGaa--------CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 108186 | 0.66 | 0.427877 |
Target: 5'- gGCCGCGGCUcc-GGGCGCgagagcugcGCCAGc -3' miRNA: 3'- gUGGCGCCGGaccCCCGCGaa-------CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 23026 | 0.66 | 0.427877 |
Target: 5'- gCGCCGCGGaCgcacGGGCGCUggGCCGu -3' miRNA: 3'- -GUGGCGCCgGacc-CCCGCGAa-CGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 40416 | 0.66 | 0.427877 |
Target: 5'- uGCCGCcGUCUgcGGGGGCGCcgGCgGAc -3' miRNA: 3'- gUGGCGcCGGA--CCCCCGCGaaCGgUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 114537 | 0.66 | 0.427877 |
Target: 5'- gACCGggcgGGCCUcgcgucGGGGGCGCUcGCUc- -3' miRNA: 3'- gUGGCg---CCGGA------CCCCCGCGAaCGGuu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 134560 | 0.66 | 0.427877 |
Target: 5'- gGCCGCGGCCUGccGGcCGCg-GCCu- -3' miRNA: 3'- gUGGCGCCGGACccCC-GCGaaCGGuu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 69948 | 0.66 | 0.427877 |
Target: 5'- -cCCGCGGCCgGGgccccgccgcgcGGGCGCaggcgcGCCAGg -3' miRNA: 3'- guGGCGCCGGaCC------------CCCGCGaa----CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 37558 | 0.66 | 0.427877 |
Target: 5'- cCGCCGCcGCCaccGGGGUGCguccUGCCGc -3' miRNA: 3'- -GUGGCGcCGGac-CCCCGCGa---ACGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 30042 | 0.66 | 0.427877 |
Target: 5'- gGCCGCGGCCUGccGGcCGCg-GCCu- -3' miRNA: 3'- gUGGCGCCGGACccCC-GCGaaCGGuu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 100525 | 0.66 | 0.427017 |
Target: 5'- gGCCGagGGCUUGGGggacgaaGGCGCcgggGCCGAa -3' miRNA: 3'- gUGGCg-CCGGACCC-------CCGCGaa--CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 88028 | 0.66 | 0.425299 |
Target: 5'- gGCCgGCGguGCCUGGGGGCGguccagucacgcgcCUgcgccgGCCGAg -3' miRNA: 3'- gUGG-CGC--CGGACCCCCGC--------------GAa-----CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 32127 | 0.66 | 0.419319 |
Target: 5'- cCACCGCGccGCCaaccgcUGGGGGCucggcgcgccGCUgcgGCCGGu -3' miRNA: 3'- -GUGGCGC--CGG------ACCCCCG----------CGAa--CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 54701 | 0.66 | 0.419319 |
Target: 5'- gCACCaugGGgCUGGaGGGCGCgUGCCGc -3' miRNA: 3'- -GUGGcg-CCgGACC-CCCGCGaACGGUu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 136645 | 0.66 | 0.419319 |
Target: 5'- cCACCGCGccGCCaaccgcUGGGGGCucggcgcgccGCUgcgGCCGGu -3' miRNA: 3'- -GUGGCGC--CGG------ACCCCCG----------CGAa--CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 20272 | 0.66 | 0.419319 |
Target: 5'- aACCGCcgGGUCgugucgcgGGGGcGCGCUUGCg-- -3' miRNA: 3'- gUGGCG--CCGGa-------CCCC-CGCGAACGguu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 100184 | 0.66 | 0.419319 |
Target: 5'- aCGCCGUGGCg-GcGGGGCaGCguggcgGCCAGc -3' miRNA: 3'- -GUGGCGCCGgaC-CCCCG-CGaa----CGGUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 79452 | 0.66 | 0.418469 |
Target: 5'- gCGCgCGCuGGCCggcgcgcUGGGGGCGCUcucgGCgCGGg -3' miRNA: 3'- -GUG-GCG-CCGG-------ACCCCCGCGAa---CG-GUU- -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 102273 | 0.66 | 0.416772 |
Target: 5'- gGCCgaGCGGCCUGGccgggcucgggccuGGGCGCccGCUg- -3' miRNA: 3'- gUGG--CGCCGGACC--------------CCCGCGaaCGGuu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 120415 | 0.67 | 0.414234 |
Target: 5'- gCGCUgaGCGGCCUGGGcuggugaacaugcgcGGCGUgcGCCu- -3' miRNA: 3'- -GUGG--CGCCGGACCC---------------CCGCGaaCGGuu -5' |
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23569 | 3' | -64.7 | NC_005261.1 | + | 133712 | 0.67 | 0.410865 |
Target: 5'- uCGCCGCGGCgCccgcGcGGGGCGCgacugggGCCc- -3' miRNA: 3'- -GUGGCGCCG-Ga---C-CCCCGCGaa-----CGGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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