miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2357 3' -57.3 NC_001416.1 + 8928 0.66 0.552118
Target:  5'- uCGUC---GCGCCGGUagucauaGCCGCUGgCCa -3'
miRNA:   3'- -GCAGucaUGCGGUCAg------CGGUGAC-GGc -5'
2357 3' -57.3 NC_001416.1 + 4915 0.66 0.552118
Target:  5'- gGUCAGUugcuUGCCAGU-GCCGCcucCCGg -3'
miRNA:   3'- gCAGUCAu---GCGGUCAgCGGUGac-GGC- -5'
2357 3' -57.3 NC_001416.1 + 4686 0.66 0.552118
Target:  5'- gGUCAGccggACGCgGG-CGCUGCaGCCGu -3'
miRNA:   3'- gCAGUCa---UGCGgUCaGCGGUGaCGGC- -5'
2357 3' -57.3 NC_001416.1 + 9146 0.67 0.520386
Target:  5'- gGUCAGUuCGCCGGgCGUCAggucuuuaacuuUUGCCa -3'
miRNA:   3'- gCAGUCAuGCGGUCaGCGGU------------GACGGc -5'
2357 3' -57.3 NC_001416.1 + 14842 0.67 0.518295
Target:  5'- --cCGGUgACGCCAGagggagugugugCGUCGCUGCCa -3'
miRNA:   3'- gcaGUCA-UGCGGUCa-----------GCGGUGACGGc -5'
2357 3' -57.3 NC_001416.1 + 17558 0.68 0.449476
Target:  5'- cCGUCGuccgggccGUGCuGaCCAGcCGCuCACUGCCGu -3'
miRNA:   3'- -GCAGU--------CAUG-C-GGUCaGCG-GUGACGGC- -5'
2357 3' -57.3 NC_001416.1 + 39578 0.68 0.449476
Target:  5'- cCGUgagCAGaUGCGUCGGaUCGCCAacaacaUGCCGg -3'
miRNA:   3'- -GCA---GUC-AUGCGGUC-AGCGGUg-----ACGGC- -5'
2357 3' -57.3 NC_001416.1 + 19296 0.71 0.325565
Target:  5'- gGUCAGUGCGUa---CGCCAUgGCCGg -3'
miRNA:   3'- gCAGUCAUGCGgucaGCGGUGaCGGC- -5'
2357 3' -57.3 NC_001416.1 + 12619 0.72 0.266995
Target:  5'- gGUgaAGcUGCGCCAGUucUGCuCACUGCCGg -3'
miRNA:   3'- gCAg-UC-AUGCGGUCA--GCG-GUGACGGC- -5'
2357 3' -57.3 NC_001416.1 + 10987 0.72 0.253751
Target:  5'- aCGcCAGcGCaCCGGUCGCCACcGCCa -3'
miRNA:   3'- -GCaGUCaUGcGGUCAGCGGUGaCGGc -5'
2357 3' -57.3 NC_001416.1 + 9495 0.74 0.185324
Target:  5'- gCGUCacGGUcAUGCCGGUUGCCGCUGUUa -3'
miRNA:   3'- -GCAG--UCA-UGCGGUCAGCGGUGACGGc -5'
2357 3' -57.3 NC_001416.1 + 19582 1 0.002682
Target:  5'- cCGUCAGUACGCCAGUCGCCAC-GCCGg -3'
miRNA:   3'- -GCAGUCAUGCGGUCAGCGGUGaCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.