Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2357 | 3' | -57.3 | NC_001416.1 | + | 8928 | 0.66 | 0.552118 |
Target: 5'- uCGUC---GCGCCGGUagucauaGCCGCUGgCCa -3' miRNA: 3'- -GCAGucaUGCGGUCAg------CGGUGAC-GGc -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 4915 | 0.66 | 0.552118 |
Target: 5'- gGUCAGUugcuUGCCAGU-GCCGCcucCCGg -3' miRNA: 3'- gCAGUCAu---GCGGUCAgCGGUGac-GGC- -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 4686 | 0.66 | 0.552118 |
Target: 5'- gGUCAGccggACGCgGG-CGCUGCaGCCGu -3' miRNA: 3'- gCAGUCa---UGCGgUCaGCGGUGaCGGC- -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 9146 | 0.67 | 0.520386 |
Target: 5'- gGUCAGUuCGCCGGgCGUCAggucuuuaacuuUUGCCa -3' miRNA: 3'- gCAGUCAuGCGGUCaGCGGU------------GACGGc -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 14842 | 0.67 | 0.518295 |
Target: 5'- --cCGGUgACGCCAGagggagugugugCGUCGCUGCCa -3' miRNA: 3'- gcaGUCA-UGCGGUCa-----------GCGGUGACGGc -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 17558 | 0.68 | 0.449476 |
Target: 5'- cCGUCGuccgggccGUGCuGaCCAGcCGCuCACUGCCGu -3' miRNA: 3'- -GCAGU--------CAUG-C-GGUCaGCG-GUGACGGC- -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 39578 | 0.68 | 0.449476 |
Target: 5'- cCGUgagCAGaUGCGUCGGaUCGCCAacaacaUGCCGg -3' miRNA: 3'- -GCA---GUC-AUGCGGUC-AGCGGUg-----ACGGC- -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 19296 | 0.71 | 0.325565 |
Target: 5'- gGUCAGUGCGUa---CGCCAUgGCCGg -3' miRNA: 3'- gCAGUCAUGCGgucaGCGGUGaCGGC- -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 12619 | 0.72 | 0.266995 |
Target: 5'- gGUgaAGcUGCGCCAGUucUGCuCACUGCCGg -3' miRNA: 3'- gCAg-UC-AUGCGGUCA--GCG-GUGACGGC- -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 10987 | 0.72 | 0.253751 |
Target: 5'- aCGcCAGcGCaCCGGUCGCCACcGCCa -3' miRNA: 3'- -GCaGUCaUGcGGUCAGCGGUGaCGGc -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 9495 | 0.74 | 0.185324 |
Target: 5'- gCGUCacGGUcAUGCCGGUUGCCGCUGUUa -3' miRNA: 3'- -GCAG--UCA-UGCGGUCAGCGGUGACGGc -5' |
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2357 | 3' | -57.3 | NC_001416.1 | + | 19582 | 1 | 0.002682 |
Target: 5'- cCGUCAGUACGCCAGUCGCCAC-GCCGg -3' miRNA: 3'- -GCAGUCAUGCGGUCAGCGGUGaCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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