miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2357 5' -48.4 NC_001416.1 + 9317 0.66 0.965298
Target:  5'- cAGCAGUAUCGguaagGCggUGACGG-CGaaGg -3'
miRNA:   3'- -UCGUUAUAGU-----UGuuGCUGCCuGCgaC- -5'
2357 5' -48.4 NC_001416.1 + 17480 0.66 0.957312
Target:  5'- gAGCGGcugGUCAGCAcggcccggACGACGGAaaccacauacCGCUu -3'
miRNA:   3'- -UCGUUa--UAGUUGU--------UGCUGCCU----------GCGAc -5'
2357 5' -48.4 NC_001416.1 + 17209 0.66 0.957312
Target:  5'- gAGUAuccGUGagAACGACGACGGcACGUa- -3'
miRNA:   3'- -UCGU---UAUagUUGUUGCUGCC-UGCGac -5'
2357 5' -48.4 NC_001416.1 + 11554 0.66 0.952882
Target:  5'- cGCAAggaugauuauuuUGUUAACGAUGaagcGCGGGCGCg- -3'
miRNA:   3'- uCGUU------------AUAGUUGUUGC----UGCCUGCGac -5'
2357 5' -48.4 NC_001416.1 + 45626 0.67 0.937779
Target:  5'- -----aAUCAACAgGCGcCGGACGCUa -3'
miRNA:   3'- ucguuaUAGUUGU-UGCuGCCUGCGAc -5'
2357 5' -48.4 NC_001416.1 + 14681 0.67 0.926164
Target:  5'- cGCAAUuuacuGCGGCGACGGcgaGCUGc -3'
miRNA:   3'- uCGUUAuagu-UGUUGCUGCCug-CGAC- -5'
2357 5' -48.4 NC_001416.1 + 15899 0.68 0.919888
Target:  5'- uGCugguUCAgauACAACGuaACGGugGCUGg -3'
miRNA:   3'- uCGuuauAGU---UGUUGC--UGCCugCGAC- -5'
2357 5' -48.4 NC_001416.1 + 8001 0.69 0.883886
Target:  5'- cGGCGAcgGUUAACGGCaGGCGGuACGCc- -3'
miRNA:   3'- -UCGUUa-UAGUUGUUG-CUGCC-UGCGac -5'
2357 5' -48.4 NC_001416.1 + 16974 0.69 0.867408
Target:  5'- uGGCGGUG--AACAGCcaGAccCGGACGCUGa -3'
miRNA:   3'- -UCGUUAUagUUGUUG--CU--GCCUGCGAC- -5'
2357 5' -48.4 NC_001416.1 + 12632 0.7 0.840642
Target:  5'- cGGgAGUAUCGGCAGCGccauugGCGGG-GCUGu -3'
miRNA:   3'- -UCgUUAUAGUUGUUGC------UGCCUgCGAC- -5'
2357 5' -48.4 NC_001416.1 + 8007 0.72 0.748276
Target:  5'- cAGCcGUAUCAGCAaaACGGCGG-UGcCUGg -3'
miRNA:   3'- -UCGuUAUAGUUGU--UGCUGCCuGC-GAC- -5'
2357 5' -48.4 NC_001416.1 + 45807 0.72 0.737168
Target:  5'- cAGCAAUAUCugggcuuCAcUGcCGGGCGCUGg -3'
miRNA:   3'- -UCGUUAUAGuu-----GUuGCuGCCUGCGAC- -5'
2357 5' -48.4 NC_001416.1 + 4522 0.74 0.633447
Target:  5'- cAGCuugggAUCAGCAGCcuGACGGAUGCg- -3'
miRNA:   3'- -UCGuua--UAGUUGUUG--CUGCCUGCGac -5'
2357 5' -48.4 NC_001416.1 + 4677 0.75 0.586757
Target:  5'- cGGCAcgcugGUCAGCcgGACG-CGGGCGCUGc -3'
miRNA:   3'- -UCGUua---UAGUUG--UUGCuGCCUGCGAC- -5'
2357 5' -48.4 NC_001416.1 + 19546 1.09 0.004636
Target:  5'- aAGCAAUAUCAACAACGACGGACGCUGc -3'
miRNA:   3'- -UCGUUAUAGUUGUUGCUGCCUGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.