Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2357 | 5' | -48.4 | NC_001416.1 | + | 9317 | 0.66 | 0.965298 |
Target: 5'- cAGCAGUAUCGguaagGCggUGACGG-CGaaGg -3' miRNA: 3'- -UCGUUAUAGU-----UGuuGCUGCCuGCgaC- -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 17209 | 0.66 | 0.957312 |
Target: 5'- gAGUAuccGUGagAACGACGACGGcACGUa- -3' miRNA: 3'- -UCGU---UAUagUUGUUGCUGCC-UGCGac -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 17480 | 0.66 | 0.957312 |
Target: 5'- gAGCGGcugGUCAGCAcggcccggACGACGGAaaccacauacCGCUu -3' miRNA: 3'- -UCGUUa--UAGUUGU--------UGCUGCCU----------GCGAc -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 11554 | 0.66 | 0.952882 |
Target: 5'- cGCAAggaugauuauuuUGUUAACGAUGaagcGCGGGCGCg- -3' miRNA: 3'- uCGUU------------AUAGUUGUUGC----UGCCUGCGac -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 45626 | 0.67 | 0.937779 |
Target: 5'- -----aAUCAACAgGCGcCGGACGCUa -3' miRNA: 3'- ucguuaUAGUUGU-UGCuGCCUGCGAc -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 14681 | 0.67 | 0.926164 |
Target: 5'- cGCAAUuuacuGCGGCGACGGcgaGCUGc -3' miRNA: 3'- uCGUUAuagu-UGUUGCUGCCug-CGAC- -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 15899 | 0.68 | 0.919888 |
Target: 5'- uGCugguUCAgauACAACGuaACGGugGCUGg -3' miRNA: 3'- uCGuuauAGU---UGUUGC--UGCCugCGAC- -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 8001 | 0.69 | 0.883886 |
Target: 5'- cGGCGAcgGUUAACGGCaGGCGGuACGCc- -3' miRNA: 3'- -UCGUUa-UAGUUGUUG-CUGCC-UGCGac -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 16974 | 0.69 | 0.867408 |
Target: 5'- uGGCGGUG--AACAGCcaGAccCGGACGCUGa -3' miRNA: 3'- -UCGUUAUagUUGUUG--CU--GCCUGCGAC- -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 12632 | 0.7 | 0.840642 |
Target: 5'- cGGgAGUAUCGGCAGCGccauugGCGGG-GCUGu -3' miRNA: 3'- -UCgUUAUAGUUGUUGC------UGCCUgCGAC- -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 8007 | 0.72 | 0.748276 |
Target: 5'- cAGCcGUAUCAGCAaaACGGCGG-UGcCUGg -3' miRNA: 3'- -UCGuUAUAGUUGU--UGCUGCCuGC-GAC- -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 45807 | 0.72 | 0.737168 |
Target: 5'- cAGCAAUAUCugggcuuCAcUGcCGGGCGCUGg -3' miRNA: 3'- -UCGUUAUAGuu-----GUuGCuGCCUGCGAC- -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 4522 | 0.74 | 0.633447 |
Target: 5'- cAGCuugggAUCAGCAGCcuGACGGAUGCg- -3' miRNA: 3'- -UCGuua--UAGUUGUUG--CUGCCUGCGac -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 4677 | 0.75 | 0.586757 |
Target: 5'- cGGCAcgcugGUCAGCcgGACG-CGGGCGCUGc -3' miRNA: 3'- -UCGUua---UAGUUG--UUGCuGCCUGCGAC- -5' |
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2357 | 5' | -48.4 | NC_001416.1 | + | 19546 | 1.09 | 0.004636 |
Target: 5'- aAGCAAUAUCAACAACGACGGACGCUGc -3' miRNA: 3'- -UCGUUAUAGUUGUUGCUGCCUGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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