miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 132982 0.66 0.691476
Target:  5'- cGGcGG-GCACGaGCCG--GCCAcGCUCGa -3'
miRNA:   3'- -CCaCCaCGUGC-CGGCugCGGU-CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 107889 0.66 0.701243
Target:  5'- --aGGgccgcgaGCGCGGCCGccagccGCGCCGGCa-- -3'
miRNA:   3'- ccaCCa------CGUGCCGGC------UGCGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 86461 0.66 0.701243
Target:  5'- --aGGgcgacGC-CGGCCaGCGCCAGCUUc -3'
miRNA:   3'- ccaCCa----CGuGCCGGcUGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 90861 0.66 0.681663
Target:  5'- cGGUuGUGCGCGcGCUGGugccCGUCGGCUuCGa -3'
miRNA:   3'- -CCAcCACGUGC-CGGCU----GCGGUCGA-GC- -5'
23570 5' -60.5 NC_005261.1 + 104899 0.66 0.681663
Target:  5'- cGGUGGcgGCgGCGGCggCGGCGgCGGCagCGg -3'
miRNA:   3'- -CCACCa-CG-UGCCG--GCUGCgGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 103187 0.66 0.690497
Target:  5'- -----cGCGCGGCCGccguuagggcggcGCGCCAGCgacCGa -3'
miRNA:   3'- ccaccaCGUGCCGGC-------------UGCGGUCGa--GC- -5'
23570 5' -60.5 NC_005261.1 + 87386 0.66 0.691476
Target:  5'- -cUGG-GCGa-GCCacaGGCGCCAGCUCGc -3'
miRNA:   3'- ccACCaCGUgcCGG---CUGCGGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 107500 0.66 0.681663
Target:  5'- aGGcUGGggcucggGCcugGCGGcCCGGCGCCggGGCUCc -3'
miRNA:   3'- -CC-ACCa------CG---UGCC-GGCUGCGG--UCGAGc -5'
23570 5' -60.5 NC_005261.1 + 52225 0.66 0.690497
Target:  5'- --cGGcUGCugGcGCaCGACGCCccgucggcggcgcAGCUCGa -3'
miRNA:   3'- ccaCC-ACGugC-CG-GCUGCGG-------------UCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 67565 0.66 0.681663
Target:  5'- uGGaGGUGCggcccGCGGCCGcgGCGCCGaacCUCa -3'
miRNA:   3'- -CCaCCACG-----UGCCGGC--UGCGGUc--GAGc -5'
23570 5' -60.5 NC_005261.1 + 29307 0.66 0.701243
Target:  5'- cGUGGgcgUGCugGGCCccgaccccGCGCCccGCUCGc -3'
miRNA:   3'- cCACC---ACGugCCGGc-------UGCGGu-CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 66044 0.66 0.701243
Target:  5'- -----cGCGCGGCCGcCGCCAacGuCUCGg -3'
miRNA:   3'- ccaccaCGUGCCGGCuGCGGU--C-GAGC- -5'
23570 5' -60.5 NC_005261.1 + 37332 0.66 0.681663
Target:  5'- cGGcGGUGCGCGG-CGAgGCCGcGUaCGa -3'
miRNA:   3'- -CCaCCACGUGCCgGCUgCGGU-CGaGC- -5'
23570 5' -60.5 NC_005261.1 + 82530 0.66 0.691476
Target:  5'- cGUGGccGCccaaGCGGCCGugGCCGccguGCUgGc -3'
miRNA:   3'- cCACCa-CG----UGCCGGCugCGGU----CGAgC- -5'
23570 5' -60.5 NC_005261.1 + 89402 0.66 0.691476
Target:  5'- --cGGcgGCGgGGCCGACGaCGGCgUCGc -3'
miRNA:   3'- ccaCCa-CGUgCCGGCUGCgGUCG-AGC- -5'
23570 5' -60.5 NC_005261.1 + 77885 0.66 0.691476
Target:  5'- -cUGGcGCGCGGCCGcgGCGCC-GCa-- -3'
miRNA:   3'- ccACCaCGUGCCGGC--UGCGGuCGagc -5'
23570 5' -60.5 NC_005261.1 + 29192 0.66 0.690497
Target:  5'- uGGcGGccGCGCGGCUGcGCGCCAcggcggcGUUCGg -3'
miRNA:   3'- -CCaCCa-CGUGCCGGC-UGCGGU-------CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 108426 0.66 0.691476
Target:  5'- --cGGgcgcccGCGCcGCCGGCGCCGGcCUCc -3'
miRNA:   3'- ccaCCa-----CGUGcCGGCUGCGGUC-GAGc -5'
23570 5' -60.5 NC_005261.1 + 60124 0.66 0.701243
Target:  5'- cGGUGGgGcCGgGGCCGGgGCCugGGC-CGg -3'
miRNA:   3'- -CCACCaC-GUgCCGGCUgCGG--UCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 128649 0.66 0.681663
Target:  5'- gGGUGGggGCugGGUgGGCGg-GGCUCa -3'
miRNA:   3'- -CCACCa-CGugCCGgCUGCggUCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.