miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 134846 0.72 0.366997
Target:  5'- aGUGccgGCGCGGCUGGCGgCCGcGCUCGc -3'
miRNA:   3'- cCACca-CGUGCCGGCUGC-GGU-CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 6340 0.73 0.329384
Target:  5'- gGGUGcgcgccgucgcGUGCgGCGGCgGcCGCCAGCUCa -3'
miRNA:   3'- -CCAC-----------CACG-UGCCGgCuGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 55538 0.73 0.329384
Target:  5'- cGUGGggaGCGCGGCggUGGCGCCcgacgagcGGCUCGa -3'
miRNA:   3'- cCACCa--CGUGCCG--GCUGCGG--------UCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 54529 0.73 0.336674
Target:  5'- -aUGGUGCGCuGGCugCGGCGCCGcCUCGg -3'
miRNA:   3'- ccACCACGUG-CCG--GCUGCGGUcGAGC- -5'
23570 5' -60.5 NC_005261.1 + 39208 0.73 0.336674
Target:  5'- uGUGG-GCGCGcGCCGccGCGCCGccGCUCGc -3'
miRNA:   3'- cCACCaCGUGC-CGGC--UGCGGU--CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 136751 0.72 0.351604
Target:  5'- cGGUGGccuucUGCGCGGCCG-CGCU-GCUgGa -3'
miRNA:   3'- -CCACC-----ACGUGCCGGCuGCGGuCGAgC- -5'
23570 5' -60.5 NC_005261.1 + 60076 0.72 0.359243
Target:  5'- aGGUGGcccgccgGCAgCGGCgGGCGCCGGggCGg -3'
miRNA:   3'- -CCACCa------CGU-GCCGgCUGCGGUCgaGC- -5'
23570 5' -60.5 NC_005261.1 + 33775 0.72 0.359243
Target:  5'- aGGUGGacgGCGCcGCCGGCGgCGGCgacgCGg -3'
miRNA:   3'- -CCACCa--CGUGcCGGCUGCgGUCGa---GC- -5'
23570 5' -60.5 NC_005261.1 + 54076 0.72 0.359243
Target:  5'- cGGUGGUgGCAggggcgUGGCCGAggccCGCCAGCg-- -3'
miRNA:   3'- -CCACCA-CGU------GCCGGCU----GCGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 98317 0.74 0.294694
Target:  5'- gGGUGGgugGCgACGGaCCGcgcGCGCCAGCUg- -3'
miRNA:   3'- -CCACCa--CG-UGCC-GGC---UGCGGUCGAgc -5'
23570 5' -60.5 NC_005261.1 + 105049 0.74 0.281637
Target:  5'- cGGgcgGGggGCAgGGCgGACGgCGGCUCGg -3'
miRNA:   3'- -CCa--CCa-CGUgCCGgCUGCgGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 74793 0.74 0.269042
Target:  5'- cGGcGG-GCGCGGCCuACGCCGGCgacggCGa -3'
miRNA:   3'- -CCaCCaCGUGCCGGcUGCGGUCGa----GC- -5'
23570 5' -60.5 NC_005261.1 + 97540 0.8 0.117681
Target:  5'- cGGaGGaGCcCGGCCGGCGCCGGCUCc -3'
miRNA:   3'- -CCaCCaCGuGCCGGCUGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 26874 0.79 0.140354
Target:  5'- cGG-GGgcagcagacGCGCGGUCGGCGCCGGCUCu -3'
miRNA:   3'- -CCaCCa--------CGUGCCGGCUGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 57025 0.76 0.227986
Target:  5'- cGGUGGUccggcucgcgcccGCGCGGCCG-UGCCccgaguacgAGCUCGg -3'
miRNA:   3'- -CCACCA-------------CGUGCCGGCuGCGG---------UCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 60413 0.75 0.239547
Target:  5'- cGGUGGUGCugGG---GCGgCAGCUCGg -3'
miRNA:   3'- -CCACCACGugCCggcUGCgGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 128418 0.75 0.239547
Target:  5'- gGGUGGgcucGCugGGCUGG-GCCAGCUgGg -3'
miRNA:   3'- -CCACCa---CGugCCGGCUgCGGUCGAgC- -5'
23570 5' -60.5 NC_005261.1 + 53575 0.75 0.239547
Target:  5'- --cGG-GCGCGGgCGGCGCCAGC-CGg -3'
miRNA:   3'- ccaCCaCGUGCCgGCUGCGGUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 5820 0.75 0.245222
Target:  5'- aGG-GGUGCGCgGGCCaGGCGUCGGCggCGg -3'
miRNA:   3'- -CCaCCACGUG-CCGG-CUGCGGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 41934 0.75 0.251008
Target:  5'- aGGUGc-GCGCGGCCGaggccgaagccGCGCCAGCgUCGu -3'
miRNA:   3'- -CCACcaCGUGCCGGC-----------UGCGGUCG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.