miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 134753 0.66 0.720603
Target:  5'- cGUGGccccgcugGCGCGGUacuCGACGCgCGGCgCGg -3'
miRNA:   3'- cCACCa-------CGUGCCG---GCUGCG-GUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 13726 0.66 0.720603
Target:  5'- cGUGGaGCACGGUgGAC-CCGGaauuCUCGa -3'
miRNA:   3'- cCACCaCGUGCCGgCUGcGGUC----GAGC- -5'
23570 5' -60.5 NC_005261.1 + 97158 0.66 0.720603
Target:  5'- cGG-GGgcugGCgGCGGaCCGcgcCGCCGGCUCu -3'
miRNA:   3'- -CCaCCa---CG-UGCC-GGCu--GCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 55118 0.66 0.710954
Target:  5'- -----cGCGCGGCUGGCGgCGGCggCGg -3'
miRNA:   3'- ccaccaCGUGCCGGCUGCgGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 82304 0.66 0.710954
Target:  5'- --cGGcUGCGC-GCCGGCGgCGGCUgCGg -3'
miRNA:   3'- ccaCC-ACGUGcCGGCUGCgGUCGA-GC- -5'
23570 5' -60.5 NC_005261.1 + 93082 0.66 0.710954
Target:  5'- --aGGUcacuuccucgGCGCGGCCGucgaGCGUCAGCaUCa -3'
miRNA:   3'- ccaCCA----------CGUGCCGGC----UGCGGUCG-AGc -5'
23570 5' -60.5 NC_005261.1 + 73890 0.66 0.710954
Target:  5'- uGGUGGUGgagGCGGgccCUGACGCgGGCaCGg -3'
miRNA:   3'- -CCACCACg--UGCC---GGCUGCGgUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 17970 0.66 0.710954
Target:  5'- gGGcGGUagACGGCCGGCGUggCAGCcgCGg -3'
miRNA:   3'- -CCaCCAcgUGCCGGCUGCG--GUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 44273 0.66 0.710954
Target:  5'- nGGgGGgGCGgGGcCCGcCGCCAGCggCGg -3'
miRNA:   3'- -CCaCCaCGUgCC-GGCuGCGGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 79327 0.66 0.710954
Target:  5'- -cUGGUGCGCGcGCUGGCGCgCGcCUgCGa -3'
miRNA:   3'- ccACCACGUGC-CGGCUGCG-GUcGA-GC- -5'
23570 5' -60.5 NC_005261.1 + 3445 0.66 0.710954
Target:  5'- aGGcgGGcGCGCgGGCCGccGCGCCGcGCgUCGa -3'
miRNA:   3'- -CCa-CCaCGUG-CCGGC--UGCGGU-CG-AGC- -5'
23570 5' -60.5 NC_005261.1 + 2488 0.66 0.710954
Target:  5'- -----cGCGCGGCUGaggcGCGCCAGCaUCa -3'
miRNA:   3'- ccaccaCGUGCCGGC----UGCGGUCG-AGc -5'
23570 5' -60.5 NC_005261.1 + 64845 0.66 0.710954
Target:  5'- uGGUGcUGCACGcGCgCGugGCCGcguGCUgGc -3'
miRNA:   3'- -CCACcACGUGC-CG-GCugCGGU---CGAgC- -5'
23570 5' -60.5 NC_005261.1 + 107962 0.66 0.710954
Target:  5'- aGGcgGGcGCGCgGGCCGccGCGCCGcGCgUCGa -3'
miRNA:   3'- -CCa-CCaCGUG-CCGGC--UGCGGU-CG-AGC- -5'
23570 5' -60.5 NC_005261.1 + 54285 0.66 0.709986
Target:  5'- gGGUGGgGCggggacagcgaugGCGGCCG-CGC--GCUCGg -3'
miRNA:   3'- -CCACCaCG-------------UGCCGGCuGCGguCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 127754 0.66 0.701243
Target:  5'- --cGGUGCAgcgGGCCG--GCCuGCUCGg -3'
miRNA:   3'- ccaCCACGUg--CCGGCugCGGuCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 29307 0.66 0.701243
Target:  5'- cGUGGgcgUGCugGGCCccgaccccGCGCCccGCUCGc -3'
miRNA:   3'- cCACC---ACGugCCGGc-------UGCGGu-CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 128304 0.66 0.701243
Target:  5'- gGGUGGgcucgccgggGCAggcCGGCUGGgGCgGGCUUGc -3'
miRNA:   3'- -CCACCa---------CGU---GCCGGCUgCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 107889 0.66 0.701243
Target:  5'- --aGGgccgcgaGCGCGGCCGccagccGCGCCGGCa-- -3'
miRNA:   3'- ccaCCa------CGUGCCGGC------UGCGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 86461 0.66 0.701243
Target:  5'- --aGGgcgacGC-CGGCCaGCGCCAGCUUc -3'
miRNA:   3'- ccaCCa----CGuGCCGGcUGCGGUCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.