miRNA display CGI


Results 181 - 200 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 122309 0.67 0.893421
Target:  5'- gGGCccCGGCcccGGCCCCGgc---UGCGCg -3'
miRNA:   3'- -CCGuaGUCG---CCGGGGUauuucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 85838 0.67 0.886525
Target:  5'- aGCGUguGguUGGCCUCGUAGAGcgccucGCGCa -3'
miRNA:   3'- cCGUAguC--GCCGGGGUAUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 94038 0.67 0.886525
Target:  5'- cGGCGgccCGGCGcGCCCCccc-AGcgGCGCc -3'
miRNA:   3'- -CCGUa--GUCGC-CGGGGuauuUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 103203 0.67 0.886525
Target:  5'- cGCG-CGGCGGCgCCuccugcagGAAGcGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGgGGua------UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 100206 0.67 0.887225
Target:  5'- uGGCGgcCAGCaGCCCCGcgUAGAGcucggccaccgccggGCGCa -3'
miRNA:   3'- -CCGUa-GUCGcCGGGGU--AUUUCa--------------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 107906 0.67 0.893421
Target:  5'- cGCggCcGCGGCCUCGgccacGAGUGcCGCg -3'
miRNA:   3'- cCGuaGuCGCCGGGGUau---UUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 12079 0.67 0.893421
Target:  5'- cGGCGUCcgcgccggGGCGGCUCa---AAG-GCGCg -3'
miRNA:   3'- -CCGUAG--------UCGCCGGGguauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 96974 0.67 0.893421
Target:  5'- gGGCGcgauUCAcGCGGCCUCGgcgcggcuAAGcGCGCc -3'
miRNA:   3'- -CCGU----AGU-CGCCGGGGUau------UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 120631 0.67 0.893421
Target:  5'- uGCuggUGGCGGCCCUGUGccugcggcgcAAG-GCGCg -3'
miRNA:   3'- cCGua-GUCGCCGGGGUAU----------UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 93736 0.67 0.896113
Target:  5'- cGGCAgcgcgcgcuucguacUCGGCGGCCCgCGc---GcGCGCg -3'
miRNA:   3'- -CCGU---------------AGUCGCCGGG-GUauuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 67123 0.67 0.886525
Target:  5'- cGCAgugCGGCGGCCCgAccgcg-GCGCc -3'
miRNA:   3'- cCGUa--GUCGCCGGGgUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 61199 0.68 0.872034
Target:  5'- gGGCcgCGcgcGCGGCCUCGgcgucggcgagGAGGgcgGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCGGGGUa----------UUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 132721 0.68 0.869782
Target:  5'- cGGCcUCGccgccgugccGCGGCCCCAgcuaccccccgGCGCg -3'
miRNA:   3'- -CCGuAGU----------CGCCGGGGUauuuca-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 8110 0.68 0.879394
Target:  5'- cGGCGcgCGGCGGCUcgCCA---AG-GCGCa -3'
miRNA:   3'- -CCGUa-GUCGCCGG--GGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 125892 0.68 0.879394
Target:  5'- cGCggCGGCGGCCgcgCCGgccAAGcGCGCg -3'
miRNA:   3'- cCGuaGUCGCCGG---GGUau-UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 106236 0.68 0.879394
Target:  5'- cGCG-CGGCGGCacgggcaCCGc--GGUGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGg------GGUauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 112398 0.68 0.872034
Target:  5'- gGGCAgcgAGCGGCUCUGUuccg-GCGCg -3'
miRNA:   3'- -CCGUag-UCGCCGGGGUAuuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 57369 0.68 0.879394
Target:  5'- cGGC-UgAGCGcGCCU---GGGGUGCGCg -3'
miRNA:   3'- -CCGuAgUCGC-CGGGguaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 83174 0.68 0.878669
Target:  5'- cGGCGgccgagcUCGcCGGCCCCGcgcAGcUGCGCg -3'
miRNA:   3'- -CCGU-------AGUcGCCGGGGUauuUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 62238 0.68 0.879394
Target:  5'- gGGCGUCcagcgcgagGGCGGCcgcgCCCGggaAGAGcUGCGUg -3'
miRNA:   3'- -CCGUAG---------UCGCCG----GGGUa--UUUC-ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.