miRNA display CGI


Results 201 - 220 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 59143 0.68 0.879394
Target:  5'- aGGC--CGGCGcGCCCCG---GGcGCGCg -3'
miRNA:   3'- -CCGuaGUCGC-CGGGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 24750 0.68 0.848634
Target:  5'- cGCAUCAGCGGCag-GUucGG-GCGCa -3'
miRNA:   3'- cCGUAGUCGCCGgggUAuuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 84226 0.68 0.848634
Target:  5'- cGCucgCGGCGGCgCCu----GUGCGCc -3'
miRNA:   3'- cCGua-GUCGCCGgGGuauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 60670 0.68 0.856648
Target:  5'- gGGCG-CGGCGGCgCCAcUGgcGgcgGCGCc -3'
miRNA:   3'- -CCGUaGUCGCCGgGGU-AUuuCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 77814 0.68 0.856648
Target:  5'- aGCG-CGGCGGCCCCGggcccGGgccggcccGCGCc -3'
miRNA:   3'- cCGUaGUCGCCGGGGUauu--UCa-------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 48945 0.68 0.856648
Target:  5'- cGGCGUUGGCGGCCgCCG---GGaaCGCc -3'
miRNA:   3'- -CCGUAGUCGCCGG-GGUauuUCacGCG- -5'
23571 5' -54.3 NC_005261.1 + 82942 0.68 0.86445
Target:  5'- cGGCucuUCAGCGcCCCCGccuccgGCGCg -3'
miRNA:   3'- -CCGu--AGUCGCcGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 28078 0.68 0.86445
Target:  5'- cGGUggCGGCGGCCaugccgaugaCGUcggcGGGGUGCGUc -3'
miRNA:   3'- -CCGuaGUCGCCGGg---------GUA----UUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 70340 0.68 0.879394
Target:  5'- cGCGUCgAGCGGgCCgGggaccgGGAGgcgGCGCg -3'
miRNA:   3'- cCGUAG-UCGCCgGGgUa-----UUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 73913 0.68 0.879394
Target:  5'- uGCAgagcCGGCGGCCCgAcugcGUGUGCc -3'
miRNA:   3'- cCGUa---GUCGCCGGGgUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 57369 0.68 0.879394
Target:  5'- cGGC-UgAGCGcGCCU---GGGGUGCGCg -3'
miRNA:   3'- -CCGuAgUCGC-CGGGguaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 83174 0.68 0.878669
Target:  5'- cGGCGgccgagcUCGcCGGCCCCGcgcAGcUGCGCg -3'
miRNA:   3'- -CCGU-------AGUcGCCGGGGUauuUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 61199 0.68 0.872034
Target:  5'- gGGCcgCGcgcGCGGCCUCGgcgucggcgagGAGGgcgGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCGGGGUa----------UUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 112398 0.68 0.872034
Target:  5'- gGGCAgcgAGCGGCUCUGUuccg-GCGCg -3'
miRNA:   3'- -CCGUag-UCGCCGGGGUAuuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 132721 0.68 0.869782
Target:  5'- cGGCcUCGccgccgugccGCGGCCCCAgcuaccccccgGCGCg -3'
miRNA:   3'- -CCGuAGU----------CGCCGGGGUauuuca-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 103722 0.68 0.882275
Target:  5'- cGGCGUCuagcuccuucuuggcGGCGGCgCCCuccgccUGCGCc -3'
miRNA:   3'- -CCGUAG---------------UCGCCG-GGGuauuucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 100860 0.68 0.879394
Target:  5'- cGCGUCGaaGGCCgCCA-GAAGcGCGCg -3'
miRNA:   3'- cCGUAGUcgCCGG-GGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 73462 0.68 0.879394
Target:  5'- cGCGUCcGCGcGCCCCcccuGGgccgcgGCGCg -3'
miRNA:   3'- cCGUAGuCGC-CGGGGuauuUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 135659 0.68 0.879394
Target:  5'- gGGCGcgGGCGGCCCUcgcucGAGGagcucUGCGCc -3'
miRNA:   3'- -CCGUagUCGCCGGGGua---UUUC-----ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 55201 0.68 0.86445
Target:  5'- cGGCG--AGCGGCCCUcccGGGG-GCGCn -3'
miRNA:   3'- -CCGUagUCGCCGGGGua-UUUCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.