miRNA display CGI


Results 101 - 120 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 90574 0.66 0.924266
Target:  5'- cGGCGcugCGGCuGGCCgUcgAGgaggacgcGGUGCGCg -3'
miRNA:   3'- -CCGUa--GUCG-CCGGgGuaUU--------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 20017 0.67 0.91859
Target:  5'- cGGcCGUCAGC-GCCCCGcgca--GCGCg -3'
miRNA:   3'- -CC-GUAGUCGcCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 17151 0.67 0.893421
Target:  5'- aGGCGcUGGCGGCCgCCGgcgcc-GCGCa -3'
miRNA:   3'- -CCGUaGUCGCCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 65707 0.67 0.91859
Target:  5'- cGCG-CAGCGaGCCgCCAaGGAGgaugcgGCGCc -3'
miRNA:   3'- cCGUaGUCGC-CGG-GGUaUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 95598 0.67 0.886525
Target:  5'- cGGCcgCGGCGGCcgagucCCCGcUGGAcuuUGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG------GGGU-AUUUc--ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 50054 0.67 0.886525
Target:  5'- cGGCGccgcCGGCGucGCCCCGgcccGGcUGCGCg -3'
miRNA:   3'- -CCGUa---GUCGC--CGGGGUauu-UC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 72691 0.67 0.886525
Target:  5'- uGGCAcgCGcugcugcccgcGCGGCCgCGcugggugaUGGAGUGCGCc -3'
miRNA:   3'- -CCGUa-GU-----------CGCCGGgGU--------AUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 122309 0.67 0.893421
Target:  5'- gGGCccCGGCcccGGCCCCGgc---UGCGCg -3'
miRNA:   3'- -CCGuaGUCG---CCGGGGUauuucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 36113 0.67 0.893421
Target:  5'- cGCGUUcucccuGGCGGCCCC------UGCGCu -3'
miRNA:   3'- cCGUAG------UCGCCGGGGuauuucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 125181 0.67 0.92089
Target:  5'- cGGCAggggcgCGcGCGGCCCCgcgcccuggcucgugGUGcuGGGggGCGCg -3'
miRNA:   3'- -CCGUa-----GU-CGCCGGGG---------------UAU--UUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 36809 0.67 0.91859
Target:  5'- cGCcUCGGCGGCCgacgUCGUGAcgcaAGcgGCGCu -3'
miRNA:   3'- cCGuAGUCGCCGG----GGUAUU----UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 15979 0.67 0.912666
Target:  5'- cGGCggCGGCgcuGGCCCUGcUGA--UGCGCg -3'
miRNA:   3'- -CCGuaGUCG---CCGGGGU-AUUucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 104920 0.67 0.912666
Target:  5'- cGGCggCAGCGGUCCUGgucccgcgacGGGGUGCcCa -3'
miRNA:   3'- -CCGuaGUCGCCGGGGUa---------UUUCACGcG- -5'
23571 5' -54.3 NC_005261.1 + 91007 0.67 0.912666
Target:  5'- gGGCccCAGCuGaGCCCCGgcggcGAGGaGCGCg -3'
miRNA:   3'- -CCGuaGUCG-C-CGGGGUa----UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 123464 0.67 0.906495
Target:  5'- cGCGg-GGCGGCCCCccUGucGcgGCGCg -3'
miRNA:   3'- cCGUagUCGCCGGGGu-AUuuCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 108045 0.67 0.906495
Target:  5'- aGCG-CGGCGGCCgCCuc--GGcGCGCa -3'
miRNA:   3'- cCGUaGUCGCCGG-GGuauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 5874 0.67 0.900079
Target:  5'- cGGCG--AGCGcGCCgCGgcgGAAGcUGCGCa -3'
miRNA:   3'- -CCGUagUCGC-CGGgGUa--UUUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 89144 0.67 0.900079
Target:  5'- cGCGcUCAGCGGgCCCGcg----GCGCg -3'
miRNA:   3'- cCGU-AGUCGCCgGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 64757 0.67 0.900079
Target:  5'- cGCcgCGccGCGGCCCag-GGGGgGCGCg -3'
miRNA:   3'- cCGuaGU--CGCCGGGguaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 18255 0.67 0.886525
Target:  5'- aGCGUCGGCcggGGCUCgacggagaCGgcGGGUGCGCg -3'
miRNA:   3'- cCGUAGUCG---CCGGG--------GUauUUCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.