miRNA display CGI


Results 141 - 160 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 35524 0.67 0.91859
Target:  5'- cGGCAUCGGCGGCaacaaCAgcagcaacGGUG-GCg -3'
miRNA:   3'- -CCGUAGUCGCCGgg---GUauu-----UCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 99545 0.67 0.91859
Target:  5'- cGCGUCcaGGCGGCgCgCCAgGAAG-GCGUc -3'
miRNA:   3'- cCGUAG--UCGCCG-G-GGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 117439 0.67 0.91859
Target:  5'- gGGguUcCGGCGGCUgCugcagAAGGUGCGg -3'
miRNA:   3'- -CCguA-GUCGCCGGgGua---UUUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 122588 0.67 0.91859
Target:  5'- cGCcgCAGCGGCCUUGUAcgccGCGUu -3'
miRNA:   3'- cCGuaGUCGCCGGGGUAUuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 125181 0.67 0.92089
Target:  5'- cGGCAggggcgCGcGCGGCCCCgcgcccuggcucgugGUGcuGGGggGCGCg -3'
miRNA:   3'- -CCGUa-----GU-CGCCGGGG---------------UAU--UUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 118060 0.67 0.912666
Target:  5'- uGGCGgccgcggCAGCGGCCgCAgcc---GCGCu -3'
miRNA:   3'- -CCGUa------GUCGCCGGgGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 403 0.67 0.912666
Target:  5'- cGGCggCAGCGGUCCUGgucccgcgacGGGGUGCcCa -3'
miRNA:   3'- -CCGuaGUCGCCGGGGUa---------UUUCACGcG- -5'
23571 5' -54.3 NC_005261.1 + 29691 0.67 0.889312
Target:  5'- cGUGUCGGCGGCgcuggccuaccgagaCCCcuuc-GUGCGCg -3'
miRNA:   3'- cCGUAGUCGCCG---------------GGGuauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 69473 0.67 0.886525
Target:  5'- cGGCGgcUCcGCGGCgCCCcgGcGG-GCGCu -3'
miRNA:   3'- -CCGU--AGuCGCCG-GGGuaUuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 98746 0.67 0.886525
Target:  5'- gGGCGaucaucguccgCGGCGGgCCCGUuGGG-GCGCc -3'
miRNA:   3'- -CCGUa----------GUCGCCgGGGUAuUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 95598 0.67 0.886525
Target:  5'- cGGCcgCGGCGGCcgagucCCCGcUGGAcuuUGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG------GGGU-AUUUc--ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 50054 0.67 0.886525
Target:  5'- cGGCGccgcCGGCGucGCCCCGgcccGGcUGCGCg -3'
miRNA:   3'- -CCGUa---GUCGC--CGGGGUauu-UC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 14664 0.67 0.886525
Target:  5'- cGGUGUaCGGgGGCCggCGUGugacGGUGCGCg -3'
miRNA:   3'- -CCGUA-GUCgCCGGg-GUAUu---UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 3199 0.67 0.886525
Target:  5'- aGGCGUCGgccucgccgccGCGGCCgCGUGcGGgcccgccGCGCc -3'
miRNA:   3'- -CCGUAGU-----------CGCCGGgGUAUuUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 72691 0.67 0.886525
Target:  5'- uGGCAcgCGcugcugcccgcGCGGCCgCGcugggugaUGGAGUGCGCc -3'
miRNA:   3'- -CCGUa-GU-----------CGCCGGgGU--------AUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 59137 0.67 0.886525
Target:  5'- cGCcuccgCAGCaaCCCCAUGAAG-GCGCu -3'
miRNA:   3'- cCGua---GUCGccGGGGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 18255 0.67 0.886525
Target:  5'- aGCGUCGGCcggGGCUCgacggagaCGgcGGGUGCGCg -3'
miRNA:   3'- cCGUAGUCG---CCGGG--------GUauUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 51782 0.67 0.908993
Target:  5'- cGGCGUCGcccuGCuGGCCguggCCAUGcucgugcugcggcuGGUGCGCg -3'
miRNA:   3'- -CCGUAGU----CG-CCGG----GGUAUu-------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 57789 0.67 0.910227
Target:  5'- cGGCGUCGcGCGGCgggcgcgcgaaggCCGUGAAG-GCGa -3'
miRNA:   3'- -CCGUAGU-CGCCGg------------GGUAUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 136454 0.67 0.91859
Target:  5'- cGGCucugCcGCGGCgCCAac--GUGCGCu -3'
miRNA:   3'- -CCGua--GuCGCCGgGGUauuuCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.