Results 161 - 180 of 441 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23571 | 5' | -54.3 | NC_005261.1 | + | 3199 | 0.67 | 0.886525 |
Target: 5'- aGGCGUCGgccucgccgccGCGGCCgCGUGcGGgcccgccGCGCc -3' miRNA: 3'- -CCGUAGU-----------CGCCGGgGUAUuUCa------CGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 14664 | 0.67 | 0.886525 |
Target: 5'- cGGUGUaCGGgGGCCggCGUGugacGGUGCGCg -3' miRNA: 3'- -CCGUA-GUCgCCGGg-GUAUu---UCACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 50054 | 0.67 | 0.886525 |
Target: 5'- cGGCGccgcCGGCGucGCCCCGgcccGGcUGCGCg -3' miRNA: 3'- -CCGUa---GUCGC--CGGGGUauu-UC-ACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 95598 | 0.67 | 0.886525 |
Target: 5'- cGGCcgCGGCGGCcgagucCCCGcUGGAcuuUGCGCc -3' miRNA: 3'- -CCGuaGUCGCCG------GGGU-AUUUc--ACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 98746 | 0.67 | 0.886525 |
Target: 5'- gGGCGaucaucguccgCGGCGGgCCCGUuGGG-GCGCc -3' miRNA: 3'- -CCGUa----------GUCGCCgGGGUAuUUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 69473 | 0.67 | 0.886525 |
Target: 5'- cGGCGgcUCcGCGGCgCCCcgGcGG-GCGCu -3' miRNA: 3'- -CCGU--AGuCGCCG-GGGuaUuUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 29691 | 0.67 | 0.889312 |
Target: 5'- cGUGUCGGCGGCgcuggccuaccgagaCCCcuuc-GUGCGCg -3' miRNA: 3'- cCGUAGUCGCCG---------------GGGuauuuCACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 2649 | 0.67 | 0.892742 |
Target: 5'- cGGCGcCGGCcguGGCCaCgAUGGgguccuuGGUGCGCa -3' miRNA: 3'- -CCGUaGUCG---CCGG-GgUAUU-------UCACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 18255 | 0.67 | 0.886525 |
Target: 5'- aGCGUCGGCcggGGCUCgacggagaCGgcGGGUGCGCg -3' miRNA: 3'- cCGUAGUCG---CCGGG--------GUauUUCACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 17151 | 0.67 | 0.893421 |
Target: 5'- aGGCGcUGGCGGCCgCCGgcgcc-GCGCa -3' miRNA: 3'- -CCGUaGUCGCCGG-GGUauuucaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 46251 | 0.67 | 0.906495 |
Target: 5'- aGGCcgCGGCGGCggccgcgaCCGUGuccccGGG-GCGCu -3' miRNA: 3'- -CCGuaGUCGCCGg-------GGUAU-----UUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 35714 | 0.67 | 0.906495 |
Target: 5'- gGGCucggUGGCGGCCCCGgccGAGGccaccUGgGCc -3' miRNA: 3'- -CCGua--GUCGCCGGGGUa--UUUC-----ACgCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 3528 | 0.67 | 0.906495 |
Target: 5'- aGCG-CGGCGGCCgCCuc--GGcGCGCa -3' miRNA: 3'- cCGUaGUCGCCGG-GGuauuUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 8557 | 0.67 | 0.906495 |
Target: 5'- cGC-UCGGCcGCCCCGgGAAGUGaggaCGCu -3' miRNA: 3'- cCGuAGUCGcCGGGGUaUUUCAC----GCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 102072 | 0.67 | 0.904596 |
Target: 5'- cGCGUCAGCuGGCCCaCGUccgcggucgggaacAGGGccgacaGCGCa -3' miRNA: 3'- cCGUAGUCG-CCGGG-GUA--------------UUUCa-----CGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 130481 | 0.67 | 0.900079 |
Target: 5'- cGGCGugccUCGGCggcgagGGCCCCGacGAcGUGgCGCa -3' miRNA: 3'- -CCGU----AGUCG------CCGGGGUauUU-CAC-GCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 121668 | 0.67 | 0.900079 |
Target: 5'- cGCGUCGGCguagguguaGGCgCCCuccAGGuUGCGCa -3' miRNA: 3'- cCGUAGUCG---------CCG-GGGuauUUC-ACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 109341 | 0.67 | 0.900079 |
Target: 5'- cGGgGUCGGCGGCCgCGUcgccGUccagccgcucgaGCGCg -3' miRNA: 3'- -CCgUAGUCGCCGGgGUAuuu-CA------------CGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 86688 | 0.67 | 0.900079 |
Target: 5'- cGGCga-GGCGGCCCaCGUAc---GCGCc -3' miRNA: 3'- -CCGuagUCGCCGGG-GUAUuucaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 49081 | 0.67 | 0.900079 |
Target: 5'- gGGCAcgcgCcGCGGgCCCGcuGAGcGCGCg -3' miRNA: 3'- -CCGUa---GuCGCCgGGGUauUUCaCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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