Results 181 - 200 of 441 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23571 | 5' | -54.3 | NC_005261.1 | + | 109491 | 0.69 | 0.840415 |
Target: 5'- cGGCGUCcucuGgGGCCUCG-GAGG-GCGCc -3' miRNA: 3'- -CCGUAGu---CgCCGGGGUaUUUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 127179 | 0.69 | 0.840415 |
Target: 5'- cGGCGccUgGGCGGCgCCCG---AGUGcCGCc -3' miRNA: 3'- -CCGU--AgUCGCCG-GGGUauuUCAC-GCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 136906 | 0.69 | 0.840415 |
Target: 5'- cGGCG-CGGCGGCguCCCG--GAGcGCGUg -3' miRNA: 3'- -CCGUaGUCGCCG--GGGUauUUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 4671 | 0.69 | 0.840415 |
Target: 5'- cGGCggCGGCGGCCCCc----GUGUc- -3' miRNA: 3'- -CCGuaGUCGCCGGGGuauuuCACGcg -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 22662 | 0.69 | 0.840415 |
Target: 5'- cGGCGccUgGGCGGCgCCCG---AGUGcCGCc -3' miRNA: 3'- -CCGU--AgUCGCCG-GGGUauuUCAC-GCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 114070 | 0.69 | 0.840415 |
Target: 5'- cGGC-UCAGCGGCgCCGagcUGGAGUuuuacCGCu -3' miRNA: 3'- -CCGuAGUCGCCGgGGU---AUUUCAc----GCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 83843 | 0.69 | 0.831999 |
Target: 5'- uGGCGggCcGCGGCCCCGcuGGGcUGgGCc -3' miRNA: 3'- -CCGUa-GuCGCCGGGGUauUUC-ACgCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 112067 | 0.69 | 0.831999 |
Target: 5'- gGGCgugcccucGUCGGCgagGGCgCCAcguGGUGCGCg -3' miRNA: 3'- -CCG--------UAGUCG---CCGgGGUauuUCACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 62044 | 0.69 | 0.831999 |
Target: 5'- cGGC-UCGGcCGGCUCCAg-----GCGCa -3' miRNA: 3'- -CCGuAGUC-GCCGGGGUauuucaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 58695 | 0.69 | 0.831999 |
Target: 5'- gGGcCGUCAGgGcGCgCCGcugaGAGGUGCGCc -3' miRNA: 3'- -CC-GUAGUCgC-CGgGGUa---UUUCACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 22058 | 0.69 | 0.831999 |
Target: 5'- gGGguUCAGgGGCUCCGgcggggcucGAGGggGCGCc -3' miRNA: 3'- -CCguAGUCgCCGGGGUa--------UUUCa-CGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 32389 | 0.69 | 0.840415 |
Target: 5'- cGGCG-CGGCGGCguCCCG--GAGcGCGUg -3' miRNA: 3'- -CCGUaGUCGCCG--GGGUauUUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 6452 | 0.69 | 0.823394 |
Target: 5'- cGGCGUCGG-GGCCCagc--GGcGCGCc -3' miRNA: 3'- -CCGUAGUCgCCGGGguauuUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 36944 | 0.69 | 0.796524 |
Target: 5'- cGCAUCGacgaccGCGGgCCCAUGGAGcccuuUGCGg -3' miRNA: 3'- cCGUAGU------CGCCgGGGUAUUUC-----ACGCg -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 42494 | 0.69 | 0.796524 |
Target: 5'- cGGCggCGGCGGCgCCGcuGAGcGCGg -3' miRNA: 3'- -CCGuaGUCGCCGgGGUauUUCaCGCg -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 127637 | 0.69 | 0.831999 |
Target: 5'- cGCGacggCGGCGGCgCCGgGGGGcGCGCg -3' miRNA: 3'- cCGUa---GUCGCCGgGGUaUUUCaCGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 103184 | 0.69 | 0.796524 |
Target: 5'- cGCcgC-GCGGCCgCCGUuAGGgcgGCGCg -3' miRNA: 3'- cCGuaGuCGCCGG-GGUAuUUCa--CGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 80523 | 0.69 | 0.831999 |
Target: 5'- gGGCAccCAGUcccaGGCCaCCGUcacgugcuGGGUGCGCa -3' miRNA: 3'- -CCGUa-GUCG----CCGG-GGUAu-------UUCACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 86489 | 0.68 | 0.847006 |
Target: 5'- cGGC--CAGCGGCagCCCGggggccugcGUGCGCa -3' miRNA: 3'- -CCGuaGUCGCCG--GGGUauuu-----CACGCG- -5' |
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23571 | 5' | -54.3 | NC_005261.1 | + | 132721 | 0.68 | 0.869782 |
Target: 5'- cGGCcUCGccgccgugccGCGGCCCCAgcuaccccccgGCGCg -3' miRNA: 3'- -CCGuAGU----------CGCCGGGGUauuuca-----CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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