miRNA display CGI


Results 121 - 140 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 83526 0.7 0.767299
Target:  5'- cGGCAc--GCGcccuccaGCCCCAU--GGUGCGCg -3'
miRNA:   3'- -CCGUaguCGC-------CGGGGUAuuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 135891 0.7 0.758577
Target:  5'- cGCAgaUC-GCGGaCCCCGaGGAcGUGCGCg -3'
miRNA:   3'- cCGU--AGuCGCC-GGGGUaUUU-CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 108073 0.7 0.758577
Target:  5'- cGGCGggcGCGGCgCCGcUAAGGcGCGCg -3'
miRNA:   3'- -CCGUaguCGCCGgGGU-AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 125350 0.7 0.777822
Target:  5'- gGGCGUcCAGCaGGCUCCGccgggcAGAGggGCGCu -3'
miRNA:   3'- -CCGUA-GUCG-CCGGGGUa-----UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 41892 0.7 0.761495
Target:  5'- gGGCGUCAggugcgcGCGGCCgCgcaggccagucagggCGUcAGGUGCGCg -3'
miRNA:   3'- -CCGUAGU-------CGCCGG-G---------------GUAuUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 103947 0.7 0.787246
Target:  5'- cGGCGUCcccGcCGGCCgCCGUGAGGUcuacgggcccgGCGUc -3'
miRNA:   3'- -CCGUAGu--C-GCCGG-GGUAUUUCA-----------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 127269 0.7 0.787246
Target:  5'- gGGCggCGGCGGCCCaCGcgucUGGGG-GCGg -3'
miRNA:   3'- -CCGuaGUCGCCGGG-GU----AUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 109236 0.7 0.787246
Target:  5'- cGGCcccggaGUCGGCGGCCCCA--GAGUcauCGg -3'
miRNA:   3'- -CCG------UAGUCGCCGGGGUauUUCAc--GCg -5'
23571 5' -54.3 NC_005261.1 + 87445 0.7 0.787246
Target:  5'- cGGCGcCggGGCGGCCgCCGccgcGGUGUGCg -3'
miRNA:   3'- -CCGUaG--UCGCCGG-GGUauu-UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 55132 0.7 0.787246
Target:  5'- cGGCggCGGCGGCgCU--GGAG-GCGCu -3'
miRNA:   3'- -CCGuaGUCGCCGgGGuaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 65584 0.7 0.78631
Target:  5'- gGGCccgaGGCGGCCCCcaggggacuAUAAAGccgccccUGCGCc -3'
miRNA:   3'- -CCGuag-UCGCCGGGG---------UAUUUC-------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 23242 0.7 0.777822
Target:  5'- gGGCcgCGGCGGCCggcccgCCAaUAAAgacgcGUGUGCa -3'
miRNA:   3'- -CCGuaGUCGCCGG------GGU-AUUU-----CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 90661 0.7 0.777822
Target:  5'- uGGcCGUC-GCGGCCaCCGUGAcgaccaucGG-GCGCg -3'
miRNA:   3'- -CC-GUAGuCGCCGG-GGUAUU--------UCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 3246 0.7 0.774014
Target:  5'- gGGCGcccCGGCGGCCCCGUccucgccgucUGCGUc -3'
miRNA:   3'- -CCGUa--GUCGCCGGGGUAuuuc------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 89352 0.7 0.768263
Target:  5'- cGGCuguUCGGCGGCUgcgccgCCAUGGcccGG-GCGCu -3'
miRNA:   3'- -CCGu--AGUCGCCGG------GGUAUU---UCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 22752 0.7 0.787246
Target:  5'- gGGCggCGGCGGCCCaCGcgucUGGGG-GCGg -3'
miRNA:   3'- -CCGuaGUCGCCGGG-GU----AUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 4719 0.7 0.787246
Target:  5'- cGGCcccggaGUCGGCGGCCCCA--GAGUcauCGg -3'
miRNA:   3'- -CCG------UAGUCGCCGGGGUauUUCAc--GCg -5'
23571 5' -54.3 NC_005261.1 + 47153 0.7 0.78631
Target:  5'- cGGCGUCGGCGGCCgagaccaCCAgcGGGa-CGCc -3'
miRNA:   3'- -CCGUAGUCGCCGG-------GGUauUUCacGCG- -5'
23571 5' -54.3 NC_005261.1 + 13863 0.7 0.78631
Target:  5'- cGGCGUCgccGGCGGCCCgGUcguacagGAAGUacaCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGGGgUA-------UUUCAc--GCG- -5'
23571 5' -54.3 NC_005261.1 + 83386 0.7 0.774014
Target:  5'- cGGCGagcGCGGCCUCGgccgaggcgagcAGGUGCGCg -3'
miRNA:   3'- -CCGUaguCGCCGGGGUau----------UUCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.