miRNA display CGI


Results 141 - 160 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 76965 0.7 0.758577
Target:  5'- gGGCAUgGGCacGGCCCCG--GAG-GCGg -3'
miRNA:   3'- -CCGUAgUCG--CCGGGGUauUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 33313 0.7 0.758577
Target:  5'- cGGCAaacaUCAccGCGGCCCUggAGGGcguccggGCGCa -3'
miRNA:   3'- -CCGU----AGU--CGCCGGGGuaUUUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 125350 0.7 0.777822
Target:  5'- gGGCGUcCAGCaGGCUCCGccgggcAGAGggGCGCu -3'
miRNA:   3'- -CCGUA-GUCG-CCGGGGUa-----UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 38487 0.7 0.745812
Target:  5'- cGGCcgCGGCGGCgUCGacuggagcgucguaUAAGGcGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGU--------------AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 1564 0.7 0.748774
Target:  5'- cGGCcgCAGCGGCgcgccgagccCCCAgcgguuGGcgGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCG----------GGGUauu---UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 3845 0.7 0.748774
Target:  5'- uGGCggCAGCGGCgCCGgcgcc-GCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 136457 0.7 0.748774
Target:  5'- gGGCAcgCGGCaGCCCCAgacuc-GCGCg -3'
miRNA:   3'- -CCGUa-GUCGcCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 74065 0.7 0.748774
Target:  5'- cGGCAgcugCGcgacGCGGCCCgGcuu-GUGCGCg -3'
miRNA:   3'- -CCGUa---GU----CGCCGGGgUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 100793 0.7 0.748774
Target:  5'- cGCAggcCAGCaGGUCCCGgAAGG-GCGCg -3'
miRNA:   3'- cCGUa--GUCG-CCGGGGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 23242 0.7 0.777822
Target:  5'- gGGCcgCGGCGGCCggcccgCCAaUAAAgacgcGUGUGCa -3'
miRNA:   3'- -CCGuaGUCGCCGG------GGU-AUUU-----CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 136906 0.69 0.840415
Target:  5'- cGGCG-CGGCGGCguCCCG--GAGcGCGUg -3'
miRNA:   3'- -CCGUaGUCGCCG--GGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 83843 0.69 0.831999
Target:  5'- uGGCGggCcGCGGCCCCGcuGGGcUGgGCc -3'
miRNA:   3'- -CCGUa-GuCGCCGGGGUauUUC-ACgCG- -5'
23571 5' -54.3 NC_005261.1 + 62044 0.69 0.831999
Target:  5'- cGGC-UCGGcCGGCUCCAg-----GCGCa -3'
miRNA:   3'- -CCGuAGUC-GCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 74818 0.69 0.837911
Target:  5'- uGGCGgaGGUGGCCgCCGUGcucgcggaccugggGAGgcgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCGG-GGUAU--------------UUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 20127 0.69 0.840415
Target:  5'- gGGCccgCAGCGGCUCCGcGA---GCGCu -3'
miRNA:   3'- -CCGua-GUCGCCGGGGUaUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 36944 0.69 0.796524
Target:  5'- cGCAUCGacgaccGCGGgCCCAUGGAGcccuuUGCGg -3'
miRNA:   3'- cCGUAGU------CGCCgGGGUAUUUC-----ACGCg -5'
23571 5' -54.3 NC_005261.1 + 127179 0.69 0.840415
Target:  5'- cGGCGccUgGGCGGCgCCCG---AGUGcCGCc -3'
miRNA:   3'- -CCGU--AgUCGCCG-GGGUauuUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 109491 0.69 0.840415
Target:  5'- cGGCGUCcucuGgGGCCUCG-GAGG-GCGCc -3'
miRNA:   3'- -CCGUAGu---CgCCGGGGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 109188 0.69 0.840415
Target:  5'- cGGCggCGGCGGCCCCc----GUGUc- -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuuCACGcg -5'
23571 5' -54.3 NC_005261.1 + 127637 0.69 0.831999
Target:  5'- cGCGacggCGGCGGCgCCGgGGGGcGCGCg -3'
miRNA:   3'- cCGUa---GUCGCCGgGGUaUUUCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.