miRNA display CGI


Results 181 - 200 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 127637 0.69 0.831999
Target:  5'- cGCGacggCGGCGGCgCCGgGGGGcGCGCg -3'
miRNA:   3'- cCGUa---GUCGCCGgGGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 112067 0.69 0.831999
Target:  5'- gGGCgugcccucGUCGGCgagGGCgCCAcguGGUGCGCg -3'
miRNA:   3'- -CCG--------UAGUCG---CCGgGGUauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 80523 0.69 0.831999
Target:  5'- gGGCAccCAGUcccaGGCCaCCGUcacgugcuGGGUGCGCa -3'
miRNA:   3'- -CCGUa-GUCG----CCGG-GGUAu-------UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 126576 0.69 0.831999
Target:  5'- gGGguUCAGgGGCUCCGgcggggcucGAGGggGCGCc -3'
miRNA:   3'- -CCguAGUCgCCGGGGUa--------UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 63027 0.69 0.831999
Target:  5'- cGCcgCcaccGCGGCCgCCAUGAAGguccgcgacaUGCGCc -3'
miRNA:   3'- cCGuaGu---CGCCGG-GGUAUUUC----------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 74818 0.69 0.837911
Target:  5'- uGGCGgaGGUGGCCgCCGUGcucgcggaccugggGAGgcgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCGG-GGUAU--------------UUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 136906 0.69 0.840415
Target:  5'- cGGCG-CGGCGGCguCCCG--GAGcGCGUg -3'
miRNA:   3'- -CCGUaGUCGCCG--GGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 29219 0.69 0.840415
Target:  5'- cGGCGUU--CGGCCCgGUGAAc-GCGCa -3'
miRNA:   3'- -CCGUAGucGCCGGGgUAUUUcaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 32389 0.69 0.840415
Target:  5'- cGGCG-CGGCGGCguCCCG--GAGcGCGUg -3'
miRNA:   3'- -CCGUaGUCGCCG--GGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 20127 0.69 0.840415
Target:  5'- gGGCccgCAGCGGCUCCGcGA---GCGCu -3'
miRNA:   3'- -CCGua-GUCGCCGGGGUaUUucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 4671 0.69 0.840415
Target:  5'- cGGCggCGGCGGCCCCc----GUGUc- -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuuCACGcg -5'
23571 5' -54.3 NC_005261.1 + 69917 0.69 0.840415
Target:  5'- cGGCAcgUCgaAGCGGCCgCA-GAGGUccGCGCc -3'
miRNA:   3'- -CCGU--AG--UCGCCGGgGUaUUUCA--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 127179 0.69 0.840415
Target:  5'- cGGCGccUgGGCGGCgCCCG---AGUGcCGCc -3'
miRNA:   3'- -CCGU--AgUCGCCG-GGGUauuUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 90175 0.69 0.840415
Target:  5'- cGGCGUgGGCcgcgGGCCCCG-AccGcGCGCg -3'
miRNA:   3'- -CCGUAgUCG----CCGGGGUaUuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 114070 0.69 0.840415
Target:  5'- cGGC-UCAGCGGCgCCGagcUGGAGUuuuacCGCu -3'
miRNA:   3'- -CCGuAGUCGCCGgGGU---AUUUCAc----GCG- -5'
23571 5' -54.3 NC_005261.1 + 22662 0.69 0.840415
Target:  5'- cGGCGccUgGGCGGCgCCCG---AGUGcCGCc -3'
miRNA:   3'- -CCGU--AgUCGCCG-GGGUauuUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 109491 0.69 0.840415
Target:  5'- cGGCGUCcucuGgGGCCUCG-GAGG-GCGCc -3'
miRNA:   3'- -CCGUAGu---CgCCGGGGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 109188 0.69 0.840415
Target:  5'- cGGCggCGGCGGCCCCc----GUGUc- -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuuCACGcg -5'
23571 5' -54.3 NC_005261.1 + 86489 0.68 0.847006
Target:  5'- cGGC--CAGCGGCagCCCGggggccugcGUGCGCa -3'
miRNA:   3'- -CCGuaGUCGCCG--GGGUauuu-----CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 84652 0.68 0.848634
Target:  5'- gGGCGcCGcCGGCCCgCGgccgcuAGUGCGCc -3'
miRNA:   3'- -CCGUaGUcGCCGGG-GUauu---UCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.