miRNA display CGI


Results 101 - 120 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 67283 0.71 0.718765
Target:  5'- cGGCGUCGGCGuuCCCGgcggacGCGCa -3'
miRNA:   3'- -CCGUAGUCGCcgGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 30412 0.71 0.728859
Target:  5'- aGGCggCGGCGGCCgC-UAGGGccgccGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGGgGuAUUUCa----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 37303 0.71 0.728859
Target:  5'- gGGCcugCAGCGGCUgCAggcGAcgcucgcggcGGUGCGCg -3'
miRNA:   3'- -CCGua-GUCGCCGGgGUa--UU----------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 73593 0.71 0.728859
Target:  5'- cGGCGgaggCGGCGGCCgCG---AGcGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGgGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 38161 0.71 0.728859
Target:  5'- gGGCG-CGGCGcGCCCCcgGGcggcGGcgGCGCg -3'
miRNA:   3'- -CCGUaGUCGC-CGGGGuaUU----UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 121184 0.71 0.728859
Target:  5'- cGGCcgCgAGCaGCCCgucGAGGUGCGCu -3'
miRNA:   3'- -CCGuaG-UCGcCGGGguaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 53212 0.71 0.735873
Target:  5'- gGGCG-CGGCGGCCgcgcgaccccgcggCCGUcaugcacuGGGUGCGCc -3'
miRNA:   3'- -CCGUaGUCGCCGG--------------GGUAu-------UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 81309 0.71 0.738865
Target:  5'- gGGC-UCAGUGGCCUUGcGGAuGUGUGCc -3'
miRNA:   3'- -CCGuAGUCGCCGGGGUaUUU-CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 51174 0.71 0.738865
Target:  5'- cGGCcgCGGUGGCgCUgcgu-GUGCGCa -3'
miRNA:   3'- -CCGuaGUCGCCGgGGuauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 64085 0.71 0.738865
Target:  5'- uGGCGUagUAGuUGGCgCCCAcAAAGUGCGg -3'
miRNA:   3'- -CCGUA--GUC-GCCG-GGGUaUUUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 61448 0.71 0.738865
Target:  5'- cGCcugCAGaCGGaCCCCGUGGAGUaccuuuucGCGCa -3'
miRNA:   3'- cCGua-GUC-GCC-GGGGUAUUUCA--------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 71958 0.71 0.738865
Target:  5'- uGGCGUCGGCGcggggcgcggaGCgCgCGgcAGGUGCGCa -3'
miRNA:   3'- -CCGUAGUCGC-----------CGgG-GUauUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 38487 0.7 0.745812
Target:  5'- cGGCcgCGGCGGCgUCGacuggagcgucguaUAAGGcGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGU--------------AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 108362 0.7 0.748774
Target:  5'- uGGCggCAGCGGCgCCGgcgcc-GCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 106081 0.7 0.748774
Target:  5'- cGGCcgCAGCGGCgcgccgagccCCCAgcgguuGGcgGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCG----------GGGUauu---UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 100793 0.7 0.748774
Target:  5'- cGCAggcCAGCaGGUCCCGgAAGG-GCGCg -3'
miRNA:   3'- cCGUa--GUCG-CCGGGGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 74065 0.7 0.748774
Target:  5'- cGGCAgcugCGcgacGCGGCCCgGcuu-GUGCGCg -3'
miRNA:   3'- -CCGUa---GU----CGCCGGGgUauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 3845 0.7 0.748774
Target:  5'- uGGCggCAGCGGCgCCGgcgcc-GCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 136457 0.7 0.748774
Target:  5'- gGGCAcgCGGCaGCCCCAgacuc-GCGCg -3'
miRNA:   3'- -CCGUa-GUCGcCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 1564 0.7 0.748774
Target:  5'- cGGCcgCAGCGGCgcgccgagccCCCAgcgguuGGcgGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCG----------GGGUauu---UCa-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.