miRNA display CGI


Results 141 - 160 of 441 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 47153 0.7 0.78631
Target:  5'- cGGCGUCGGCGGCCgagaccaCCAgcGGGa-CGCc -3'
miRNA:   3'- -CCGUAGUCGCCGG-------GGUauUUCacGCG- -5'
23571 5' -54.3 NC_005261.1 + 65584 0.7 0.78631
Target:  5'- gGGCccgaGGCGGCCCCcaggggacuAUAAAGccgccccUGCGCc -3'
miRNA:   3'- -CCGuag-UCGCCGGGG---------UAUUUC-------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 87445 0.7 0.787246
Target:  5'- cGGCGcCggGGCGGCCgCCGccgcGGUGUGCg -3'
miRNA:   3'- -CCGUaG--UCGCCGG-GGUauu-UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 103947 0.7 0.787246
Target:  5'- cGGCGUCcccGcCGGCCgCCGUGAGGUcuacgggcccgGCGUc -3'
miRNA:   3'- -CCGUAGu--C-GCCGG-GGUAUUUCA-----------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 4719 0.7 0.787246
Target:  5'- cGGCcccggaGUCGGCGGCCCCA--GAGUcauCGg -3'
miRNA:   3'- -CCG------UAGUCGCCGGGGUauUUCAc--GCg -5'
23571 5' -54.3 NC_005261.1 + 43278 0.7 0.787246
Target:  5'- gGGCGUC-GCGGCCgCCuuucccgcgGGGG-GCGCc -3'
miRNA:   3'- -CCGUAGuCGCCGG-GGua-------UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 55132 0.7 0.787246
Target:  5'- cGGCggCGGCGGCgCU--GGAG-GCGCu -3'
miRNA:   3'- -CCGuaGUCGCCGgGGuaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 127269 0.7 0.787246
Target:  5'- gGGCggCGGCGGCCCaCGcgucUGGGG-GCGg -3'
miRNA:   3'- -CCGuaGUCGCCGGG-GU----AUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 22752 0.7 0.787246
Target:  5'- gGGCggCGGCGGCCCaCGcgucUGGGG-GCGg -3'
miRNA:   3'- -CCGuaGUCGCCGGG-GU----AUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 109236 0.7 0.787246
Target:  5'- cGGCcccggaGUCGGCGGCCCCA--GAGUcauCGg -3'
miRNA:   3'- -CCG------UAGUCGCCGGGGUauUUCAc--GCg -5'
23571 5' -54.3 NC_005261.1 + 132717 0.69 0.792831
Target:  5'- cGGCGcccuaccucauugCGGCGGCCCCGcacucAAGGgcaucGCGCg -3'
miRNA:   3'- -CCGUa------------GUCGCCGGGGUa----UUUCa----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 94151 0.69 0.793756
Target:  5'- aGCGUCAGCgcccgggucgcgaaGGCgCCCAccagcgUGGcgcGGUGCGCg -3'
miRNA:   3'- cCGUAGUCG--------------CCG-GGGU------AUU---UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 86990 0.69 0.796524
Target:  5'- cGGCGcccUC-GUGGCCCuCGUcgaaggccAAGUGCGCg -3'
miRNA:   3'- -CCGU---AGuCGCCGGG-GUAu-------UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 42494 0.69 0.796524
Target:  5'- cGGCggCGGCGGCgCCGcuGAGcGCGg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUauUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 127684 0.69 0.796524
Target:  5'- cGGCGgccgcugcccCGGCGGCgCCGgagGAGcUGCGCg -3'
miRNA:   3'- -CCGUa---------GUCGCCGgGGUau-UUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 104526 0.69 0.796524
Target:  5'- cGCGaCGGCGGCCgCCAcc-AG-GCGCa -3'
miRNA:   3'- cCGUaGUCGCCGG-GGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 49452 0.69 0.796524
Target:  5'- cGGCGcCGGCGGCCagggccGAGGaGCGCa -3'
miRNA:   3'- -CCGUaGUCGCCGGggua--UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 60909 0.69 0.796524
Target:  5'- cGGCGcCGGCGgaaGCUCCGgcUGgcGUGCGCg -3'
miRNA:   3'- -CCGUaGUCGC---CGGGGU--AUuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 36944 0.69 0.796524
Target:  5'- cGCAUCGacgaccGCGGgCCCAUGGAGcccuuUGCGg -3'
miRNA:   3'- cCGUAGU------CGCCgGGGUAUUUC-----ACGCg -5'
23571 5' -54.3 NC_005261.1 + 119686 0.69 0.796524
Target:  5'- cGCGUCGGCaGGUCCCGcuccacGCGCg -3'
miRNA:   3'- cCGUAGUCG-CCGGGGUauuucaCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.