miRNA display CGI


Results 161 - 180 of 441 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 36944 0.69 0.796524
Target:  5'- cGCAUCGacgaccGCGGgCCCAUGGAGcccuuUGCGg -3'
miRNA:   3'- cCGUAGU------CGCCgGGGUAUUUC-----ACGCg -5'
23571 5' -54.3 NC_005261.1 + 49452 0.69 0.796524
Target:  5'- cGGCGcCGGCGGCCagggccGAGGaGCGCa -3'
miRNA:   3'- -CCGUaGUCGCCGGggua--UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 103184 0.69 0.796524
Target:  5'- cGCcgC-GCGGCCgCCGUuAGGgcgGCGCg -3'
miRNA:   3'- cCGuaGuCGCCGG-GGUAuUUCa--CGCG- -5'
23571 5' -54.3 NC_005261.1 + 42494 0.69 0.796524
Target:  5'- cGGCggCGGCGGCgCCGcuGAGcGCGg -3'
miRNA:   3'- -CCGuaGUCGCCGgGGUauUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 62526 0.69 0.805647
Target:  5'- aGGCGccgcgCGGCaugGGCCCCAcgccgAGAG-GCGCc -3'
miRNA:   3'- -CCGUa----GUCG---CCGGGGUa----UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 90905 0.69 0.813718
Target:  5'- cGGCAggucUCGGCGGCgcucuuccgcccgCCCAUcaagcucGAGUGCGa -3'
miRNA:   3'- -CCGU----AGUCGCCG-------------GGGUAu------UUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 44273 0.69 0.814607
Target:  5'- uGGCGUCGaCGGCCgaccgCCcgGAGGcgGCGCc -3'
miRNA:   3'- -CCGUAGUcGCCGG-----GGuaUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 85550 0.69 0.814607
Target:  5'- cGGCuccGUCuGCGGCgCCGcGAGGUucgGCGCc -3'
miRNA:   3'- -CCG---UAGuCGCCGgGGUaUUUCA---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 27681 0.69 0.814607
Target:  5'- cGgGUguGCGGCCUgGUcc-GUGCGCg -3'
miRNA:   3'- cCgUAguCGCCGGGgUAuuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 20566 0.69 0.814607
Target:  5'- gGGCugcgCAGCGGCgCCGgcg---GCGCg -3'
miRNA:   3'- -CCGua--GUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 127730 0.69 0.823394
Target:  5'- cGCAgCGGCGGCCgCCGcAAaagccGGUGCaGCg -3'
miRNA:   3'- cCGUaGUCGCCGG-GGUaUU-----UCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 35750 0.69 0.823394
Target:  5'- uGGCG-CGGCGGCgCgCCGaGGAGguccgGCGCc -3'
miRNA:   3'- -CCGUaGUCGCCG-G-GGUaUUUCa----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 93674 0.69 0.823394
Target:  5'- cGCGggCGGCGGCgCCGgcGGG-GCGCc -3'
miRNA:   3'- cCGUa-GUCGCCGgGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 122286 0.69 0.823394
Target:  5'- aGCAUCAgcGCGGCCCCGc----UGcCGCa -3'
miRNA:   3'- cCGUAGU--CGCCGGGGUauuucAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 121389 0.69 0.823394
Target:  5'- cGCggCGGCGGCgCCugcccGAGUGCGa -3'
miRNA:   3'- cCGuaGUCGCCGgGGuau--UUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 6452 0.69 0.823394
Target:  5'- cGGCGUCGG-GGCCCagc--GGcGCGCc -3'
miRNA:   3'- -CCGUAGUCgCCGGGguauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 83843 0.69 0.831999
Target:  5'- uGGCGggCcGCGGCCCCGcuGGGcUGgGCc -3'
miRNA:   3'- -CCGUa-GuCGCCGGGGUauUUC-ACgCG- -5'
23571 5' -54.3 NC_005261.1 + 62044 0.69 0.831999
Target:  5'- cGGC-UCGGcCGGCUCCAg-----GCGCa -3'
miRNA:   3'- -CCGuAGUC-GCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 112067 0.69 0.831999
Target:  5'- gGGCgugcccucGUCGGCgagGGCgCCAcguGGUGCGCg -3'
miRNA:   3'- -CCG--------UAGUCG---CCGgGGUauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 126576 0.69 0.831999
Target:  5'- gGGguUCAGgGGCUCCGgcggggcucGAGGggGCGCc -3'
miRNA:   3'- -CCguAGUCgCCGGGGUa--------UUUCa-CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.