miRNA display CGI


Results 121 - 140 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 81431 0.67 0.912666
Target:  5'- cGGCgucGUCGGCcGCCCCGcgGcGG-GCGCc -3'
miRNA:   3'- -CCG---UAGUCGcCGGGGUa-UuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 52374 0.67 0.912666
Target:  5'- cGCggCGGCGGCCCCGgucgucAGG-GCcuGCa -3'
miRNA:   3'- cCGuaGUCGCCGGGGUau----UUCaCG--CG- -5'
23571 5' -54.3 NC_005261.1 + 138074 0.67 0.912666
Target:  5'- cGGCggCAGCGGUCCUGgucccgcgacGGGGUGCcCa -3'
miRNA:   3'- -CCGuaGUCGCCGGGGUa---------UUUCACGcG- -5'
23571 5' -54.3 NC_005261.1 + 118060 0.67 0.912666
Target:  5'- uGGCGgccgcggCAGCGGCCgCAgcc---GCGCu -3'
miRNA:   3'- -CCGUa------GUCGCCGGgGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 403 0.67 0.912666
Target:  5'- cGGCggCAGCGGUCCUGgucccgcgacGGGGUGCcCa -3'
miRNA:   3'- -CCGuaGUCGCCGGGGUa---------UUUCACGcG- -5'
23571 5' -54.3 NC_005261.1 + 91007 0.67 0.912666
Target:  5'- gGGCccCAGCuGaGCCCCGgcggcGAGGaGCGCg -3'
miRNA:   3'- -CCGuaGUCG-C-CGGGGUa----UUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 104920 0.67 0.912666
Target:  5'- cGGCggCAGCGGUCCUGgucccgcgacGGGGUGCcCa -3'
miRNA:   3'- -CCGuaGUCGCCGGGGUa---------UUUCACGcG- -5'
23571 5' -54.3 NC_005261.1 + 105978 0.67 0.912666
Target:  5'- cGGCGU--GCGGCUCCAgca---GCGCg -3'
miRNA:   3'- -CCGUAguCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 52790 0.67 0.912666
Target:  5'- cGGCG--GGCGGCgCCAacaugucgGAGGcgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCGgGGUa-------UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 126019 0.67 0.912666
Target:  5'- cGGCAgcagCGGCGGCggcaCCGgc-GGcgGCGCu -3'
miRNA:   3'- -CCGUa---GUCGCCGg---GGUauuUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 96028 0.67 0.912666
Target:  5'- gGGCGccCGcGCGGCgCCGUGGAGcggcucGCGCc -3'
miRNA:   3'- -CCGUa-GU-CGCCGgGGUAUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 27859 0.67 0.912666
Target:  5'- cGCAgcgccaugCGGCGGUCgCCcgAguuggaaaucAGGUGCGCg -3'
miRNA:   3'- cCGUa-------GUCGCCGG-GGuaU----------UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 15979 0.67 0.912666
Target:  5'- cGGCggCGGCgcuGGCCCUGcUGA--UGCGCg -3'
miRNA:   3'- -CCGuaGUCG---CCGGGGU-AUUucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 57789 0.67 0.910227
Target:  5'- cGGCGUCGcGCGGCgggcgcgcgaaggCCGUGAAG-GCGa -3'
miRNA:   3'- -CCGUAGU-CGCCGg------------GGUAUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 51782 0.67 0.908993
Target:  5'- cGGCGUCGcccuGCuGGCCguggCCAUGcucgugcugcggcuGGUGCGCg -3'
miRNA:   3'- -CCGUAGU----CG-CCGG----GGUAUu-------------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 113074 0.67 0.906495
Target:  5'- cGC-UCGGCcGCCCCGgGAAGUGaggaCGCu -3'
miRNA:   3'- cCGuAGUCGcCGGGGUaUUUCAC----GCG- -5'
23571 5' -54.3 NC_005261.1 + 108045 0.67 0.906495
Target:  5'- aGCG-CGGCGGCCgCCuc--GGcGCGCa -3'
miRNA:   3'- cCGUaGUCGCCGG-GGuauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 123464 0.67 0.906495
Target:  5'- cGCGg-GGCGGCCCCccUGucGcgGCGCg -3'
miRNA:   3'- cCGUagUCGCCGGGGu-AUuuCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 34842 0.67 0.906495
Target:  5'- aGGCGcaGGCGGCCgCGgcgcGGcgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCGGgGUauu-UCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 58978 0.67 0.906495
Target:  5'- cGCGUCGaaGGCCuCCAcGGgcggcGGUGCGCc -3'
miRNA:   3'- cCGUAGUcgCCGG-GGUaUU-----UCACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.