miRNA display CGI


Results 161 - 180 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 15273 0.67 0.900079
Target:  5'- uGUGUguGgGGCCCCGcuguuUGGGGUugaGCGCg -3'
miRNA:   3'- cCGUAguCgCCGGGGU-----AUUUCA---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 49535 0.67 0.900079
Target:  5'- aGGuCAaCGGCGGCCuucuCCAUGuaaaaguAGUGcCGCa -3'
miRNA:   3'- -CC-GUaGUCGCCGG----GGUAUu------UCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 64757 0.67 0.900079
Target:  5'- cGCcgCGccGCGGCCCag-GGGGgGCGCg -3'
miRNA:   3'- cCGuaGU--CGCCGGGguaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 82807 0.67 0.900079
Target:  5'- gGGCucgCGGUGGCgCCAgccGGcGCGCc -3'
miRNA:   3'- -CCGua-GUCGCCGgGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 89144 0.67 0.900079
Target:  5'- cGCGcUCAGCGGgCCCGcg----GCGCg -3'
miRNA:   3'- cCGU-AGUCGCCgGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 5874 0.67 0.900079
Target:  5'- cGGCG--AGCGcGCCgCGgcgGAAGcUGCGCa -3'
miRNA:   3'- -CCGUagUCGC-CGGgGUa--UUUC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 93736 0.67 0.896113
Target:  5'- cGGCAgcgcgcgcuucguacUCGGCGGCCCgCGc---GcGCGCg -3'
miRNA:   3'- -CCGU---------------AGUCGCCGGG-GUauuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 36113 0.67 0.893421
Target:  5'- cGCGUUcucccuGGCGGCCCC------UGCGCu -3'
miRNA:   3'- cCGUAG------UCGCCGGGGuauuucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 17151 0.67 0.893421
Target:  5'- aGGCGcUGGCGGCCgCCGgcgcc-GCGCa -3'
miRNA:   3'- -CCGUaGUCGCCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 122309 0.67 0.893421
Target:  5'- gGGCccCGGCcccGGCCCCGgc---UGCGCg -3'
miRNA:   3'- -CCGuaGUCG---CCGGGGUauuucACGCG- -5'
23571 5' -54.3 NC_005261.1 + 96974 0.67 0.893421
Target:  5'- gGGCGcgauUCAcGCGGCCUCGgcgcggcuAAGcGCGCc -3'
miRNA:   3'- -CCGU----AGU-CGCCGGGGUau------UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 12079 0.67 0.893421
Target:  5'- cGGCGUCcgcgccggGGCGGCUCa---AAG-GCGCg -3'
miRNA:   3'- -CCGUAG--------UCGCCGGGguauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 107906 0.67 0.893421
Target:  5'- cGCggCcGCGGCCUCGgccacGAGUGcCGCg -3'
miRNA:   3'- cCGuaGuCGCCGGGGUau---UUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 120631 0.67 0.893421
Target:  5'- uGCuggUGGCGGCCCUGUGccugcggcgcAAG-GCGCg -3'
miRNA:   3'- cCGua-GUCGCCGGGGUAU----------UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 127016 0.67 0.893421
Target:  5'- cGCAggCGGCGGCCCgAgcagGGAGU-CGUc -3'
miRNA:   3'- cCGUa-GUCGCCGGGgUa---UUUCAcGCG- -5'
23571 5' -54.3 NC_005261.1 + 2649 0.67 0.892742
Target:  5'- cGGCGcCGGCcguGGCCaCgAUGGgguccuuGGUGCGCa -3'
miRNA:   3'- -CCGUaGUCG---CCGG-GgUAUU-------UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 29691 0.67 0.889312
Target:  5'- cGUGUCGGCGGCgcuggccuaccgagaCCCcuuc-GUGCGCg -3'
miRNA:   3'- cCGUAGUCGCCG---------------GGGuauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 100206 0.67 0.887225
Target:  5'- uGGCGgcCAGCaGCCCCGcgUAGAGcucggccaccgccggGCGCa -3'
miRNA:   3'- -CCGUa-GUCGcCGGGGU--AUUUCa--------------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 50054 0.67 0.886525
Target:  5'- cGGCGccgcCGGCGucGCCCCGgcccGGcUGCGCg -3'
miRNA:   3'- -CCGUa---GUCGC--CGGGGUauu-UC-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 95598 0.67 0.886525
Target:  5'- cGGCcgCGGCGGCcgagucCCCGcUGGAcuuUGCGCc -3'
miRNA:   3'- -CCGuaGUCGCCG------GGGU-AUUUc--ACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.